Commit graph

220 commits

Author SHA1 Message Date
1e4817196c
chore(script): Rename data paths 2023-12-07 11:20:01 +01:00
12704e64f5
feat(repo): Add edit task to poe 2023-12-07 11:06:48 +01:00
6130c79c53
feat(script): Add first gender annotations 2023-12-07 11:06:10 +01:00
9df67f6189
chore(data): Update bibkeys and files 2023-12-07 10:49:25 +01:00
ce2a231478
feat(data): Extract Stock2021 2023-12-07 10:49:08 +01:00
52f9d8635f
feat(repo): Add task runner for common operations
Set up poethepoet for quarto rendering and previewing.
Can be invoked through `poetry preview` or `poetry render`.
Will for now only preview the main scoping review file.
2023-12-07 09:30:16 +01:00
fae59c5a7d
chore(repo): Update quarto html rendering 2023-12-07 09:21:30 +01:00
ff4af556a5
feat(scripts): Add figure for intervention and inequality types 2023-12-07 09:05:04 +01:00
3a4a7b5621
chore(scripts): Move notes to notes.qmd file
Required for computational cells to be executed by quarto.
Also imported all the standard stuff for python ds to work.
2023-12-06 23:25:42 +01:00
b7e76b635a
chore(data): Add missing intervention type tags 2023-12-06 21:31:25 +01:00
6020d122b6
feat(script): Switch term tables to data driven design
Moved term tables to data directory as csv files and included them
in main script from there, to function as single source of truth.
2023-12-06 17:38:54 +01:00
92a1162dce
chore(notes): Notify on source of truth for extraction
Added small note on actual source of truth for extraction data in
data directory.
2023-12-06 17:12:38 +01:00
e8842144bd
feat(notes): Integrate dynamic inclusion criteria table
Add same source-of-trugh inclusion table as integrated in the main
text, sourced directly form tsv in the data directory.
2023-12-06 17:09:52 +01:00
5cb794e1b5
chore(data): Add irrelevant extraction data deGeus2022 2023-12-06 17:06:20 +01:00
193f4d3b35
chore(notes): Make screening tool tags lists 2023-12-06 17:05:55 +01:00
6cd77a4909
feat(notes): Add global region to tags 2023-12-06 16:56:03 +01:00
7a3ed53ea1
fix(script): Correctly import relevant bibtex entries 2023-12-06 16:42:32 +01:00
1b660f9621
fix(script): Correct display of inclusion criteria table 2023-12-06 16:42:00 +01:00
d9cd5fad1a
feat(script): Add dynamic inclusion criteria table
In order to pursue single source of truth, we now
explicitly integrate the inclusion criteria table
from a tsv file in the data directory in the main
manuscript. Other locations should also make use
of that file to create their table.
2023-12-06 16:13:00 +01:00
b5c0df16e3
feat(script): Add dynamic screening flowchart
Added mermaid flowchart showing the screening numbers, based on
dynamic calculations done at document rendering. Currently missing
some calculations (un-deduplicated numbers and final relevant number).
2023-12-06 16:13:00 +01:00
c7ac283ad5
feat(data): Unify interventions for childcare subsidy 2023-12-06 16:09:53 +01:00
b574084023
chore(code): Update live zotero citation plugin 2023-12-06 16:09:47 +01:00
46fa835d13
chore(data): Add working sample bibtex to repo data
Added bibtex file containing the up-to-date working sample of the Zotero
library to data/intermediate. It can be used to count sources based on
their keywords such as how many were sorted out during which step,
which regions they belong to and so on.
2023-12-06 16:04:09 +01:00
3c6e166568
chore(data): Remove exploratory query data 2023-12-06 14:24:48 +01:00
4c493db50c
feat(data): Extract Hojman2019 2023-12-06 13:00:26 +01:00
8a3a244c54
feat(data): Extract Clark2019 2023-12-06 12:10:25 +01:00
6e8a7f2a1f
feat(data): Extract Broadway2020 2023-12-06 11:40:31 +01:00
2a3d282587
chore(data): Update lib 2023-12-06 11:16:22 +01:00
81720563cb
feat(data): Extract Chao2022 2023-12-06 11:16:22 +01:00
8c579315df
feat(data): Add indicator used to Debowicz2014 2023-12-06 11:05:40 +01:00
2d45f26a1f
chore(data): Fix Sotomayor publication date in name 2023-12-06 10:13:08 +01:00
40a3df132a
chore(repo): Fix links to bibtex file
Fixed any relative links to the bibtex file for generating annotations
or similar.
2023-12-05 16:42:20 +01:00
82b0453187
chore(repo): Move supplementary data to data dir
Since we now have a 'documentation' directory instead of a
'supplementary-data' one, actual supplementary data should
move to the actual data directory, which is what it does
with this commit.
2023-12-05 16:38:46 +01:00
3482115546
chore(repo): Rename supp data to documentation dir
We predominantly keep documentation in here, so that is what it
should be called.
2023-12-05 16:37:43 +01:00
4e3a6da60b
chore(repo): Add output folder to git repository 2023-12-05 16:29:57 +01:00
c7533e01d6
feat(script): Add yaml simple yaml to dataframe loader
Ingests all yaml files in the directory, and loads the data for each study.

Currently creates a dataframe for each *observation* in the pool (can be
multiple per study, if a study has multiple analyses for different
independent/dependent vars). This is to follow the tidy data paradigm
of one observation per row.
2023-12-05 16:24:11 +01:00
5b78a7fb1a
feat(data): Extract Debowicz2014, Sotomayor2020 2023-12-05 12:24:58 +01:00
e6b71ed6fc
chore(data): Remove unused intermediate papis lib 2023-12-05 08:15:47 +01:00
5a0f366b24
feat(notes): Add questions for next meeting 2023-12-04 20:34:40 +01:00
42cee69831
chore(data): Begin screening for title and abstract 2023-12-04 20:34:25 +01:00
d69eb0db17
chore(notes): Add year-tracker for screening pool
Added simple tracker for years done in the screening pool,
and those still outstanding for now.
2023-12-04 20:33:46 +01:00
e63bf1c99c
feat(notes): Add screening tool with keywords
Added a long list of all tags currently in use and
begin explaining what they are used for.
2023-12-04 20:33:07 +01:00
75783a48e2
chore(data): De-duplicate bibtex studies 2023-12-04 20:31:53 +01:00
dc91f4a4ff
chore(notes): Add raw source counts for each category
Added raw (not yet de-deduplicated) source counts for each of the sample
categories (snowball sources, database queries).
2023-12-04 20:31:42 +01:00
90403bd3be
feat(data): Add 6 more snowballing sources 2023-11-24 11:25:06 +01:00
33a2bbd0f8
feat(data): Begin adding snowball review sources 2023-11-20 20:05:08 +01:00
874cf781cc
chore(data): Fix bibfile journal entry 2023-11-20 17:34:28 +01:00
66c53242db
chore(notes): Update lib and meeting minutes 2023-11-12 18:59:06 +01:00
7a2d12d252
feat(script): Add first data descriptions
Added preliminary data visualizations and descriptions for the current
identified pool. Not for anything screened yet, but for raw identified
results to use in guiding my screening.
2023-11-12 18:12:07 +01:00
7391c03582
chore(script): Integrate updated inclusion criteria table 2023-11-12 18:11:11 +01:00