343de33552
chore(data): Switch to -1/0/1 coding for impact direction
...
So we can also express simply no relation between the variables in
any direction.
2023-12-07 14:36:39 +01:00
0c70a4a2b1
feat(data): Extract Adam2018
2023-12-07 13:56:23 +01:00
446db080f6
chore(code): Refactor yml loading code
...
Fix for new paths and restructure to have the from_yml and to_tsv
functions in the same data loading file.
Improved path behavior to resolve any paths to absolutes before
loading.
2023-12-07 13:04:29 +01:00
d3a6b1296b
chore(repo): Move extracted yml data to processed dir
...
Since it has been processed it should reside in the processed dir
2023-12-07 12:44:00 +01:00
4cc1fb8b34
chore(data): Update bib file associations
2023-12-07 12:40:44 +01:00
11ce772809
feat(data): Update query to actual WOS undertaken
2023-12-07 11:21:24 +01:00
90b23349b4
feat(notes): Ensure notes use embedded query
2023-12-07 11:21:10 +01:00
7329540465
feat(script): Move query to imported file
...
Moved search query to file which is imported and acts as
single source of truth for script, notes, etc.
2023-12-07 11:20:02 +01:00
1e4817196c
chore(script): Rename data paths
2023-12-07 11:20:01 +01:00
12704e64f5
feat(repo): Add edit task to poe
2023-12-07 11:06:48 +01:00
6130c79c53
feat(script): Add first gender annotations
2023-12-07 11:06:10 +01:00
9df67f6189
chore(data): Update bibkeys and files
2023-12-07 10:49:25 +01:00
ce2a231478
feat(data): Extract Stock2021
2023-12-07 10:49:08 +01:00
52f9d8635f
feat(repo): Add task runner for common operations
...
Set up poethepoet for quarto rendering and previewing.
Can be invoked through `poetry preview` or `poetry render`.
Will for now only preview the main scoping review file.
2023-12-07 09:30:16 +01:00
fae59c5a7d
chore(repo): Update quarto html rendering
2023-12-07 09:21:30 +01:00
ff4af556a5
feat(scripts): Add figure for intervention and inequality types
2023-12-07 09:05:04 +01:00
3a4a7b5621
chore(scripts): Move notes to notes.qmd file
...
Required for computational cells to be executed by quarto.
Also imported all the standard stuff for python ds to work.
2023-12-06 23:25:42 +01:00
b7e76b635a
chore(data): Add missing intervention type tags
2023-12-06 21:31:25 +01:00
6020d122b6
feat(script): Switch term tables to data driven design
...
Moved term tables to data directory as csv files and included them
in main script from there, to function as single source of truth.
2023-12-06 17:38:54 +01:00
92a1162dce
chore(notes): Notify on source of truth for extraction
...
Added small note on actual source of truth for extraction data in
data directory.
2023-12-06 17:12:38 +01:00
e8842144bd
feat(notes): Integrate dynamic inclusion criteria table
...
Add same source-of-trugh inclusion table as integrated in the main
text, sourced directly form tsv in the data directory.
2023-12-06 17:09:52 +01:00
5cb794e1b5
chore(data): Add irrelevant extraction data deGeus2022
2023-12-06 17:06:20 +01:00
193f4d3b35
chore(notes): Make screening tool tags lists
2023-12-06 17:05:55 +01:00
6cd77a4909
feat(notes): Add global region to tags
2023-12-06 16:56:03 +01:00
7a3ed53ea1
fix(script): Correctly import relevant bibtex entries
2023-12-06 16:42:32 +01:00
1b660f9621
fix(script): Correct display of inclusion criteria table
2023-12-06 16:42:00 +01:00
d9cd5fad1a
feat(script): Add dynamic inclusion criteria table
...
In order to pursue single source of truth, we now
explicitly integrate the inclusion criteria table
from a tsv file in the data directory in the main
manuscript. Other locations should also make use
of that file to create their table.
2023-12-06 16:13:00 +01:00
b5c0df16e3
feat(script): Add dynamic screening flowchart
...
Added mermaid flowchart showing the screening numbers, based on
dynamic calculations done at document rendering. Currently missing
some calculations (un-deduplicated numbers and final relevant number).
2023-12-06 16:13:00 +01:00
c7ac283ad5
feat(data): Unify interventions for childcare subsidy
2023-12-06 16:09:53 +01:00
b574084023
chore(code): Update live zotero citation plugin
2023-12-06 16:09:47 +01:00
46fa835d13
chore(data): Add working sample bibtex to repo data
...
Added bibtex file containing the up-to-date working sample of the Zotero
library to data/intermediate. It can be used to count sources based on
their keywords such as how many were sorted out during which step,
which regions they belong to and so on.
2023-12-06 16:04:09 +01:00
3c6e166568
chore(data): Remove exploratory query data
2023-12-06 14:24:48 +01:00
4c493db50c
feat(data): Extract Hojman2019
2023-12-06 13:00:26 +01:00
8a3a244c54
feat(data): Extract Clark2019
2023-12-06 12:10:25 +01:00
6e8a7f2a1f
feat(data): Extract Broadway2020
2023-12-06 11:40:31 +01:00
2a3d282587
chore(data): Update lib
2023-12-06 11:16:22 +01:00
81720563cb
feat(data): Extract Chao2022
2023-12-06 11:16:22 +01:00
8c579315df
feat(data): Add indicator used to Debowicz2014
2023-12-06 11:05:40 +01:00
2d45f26a1f
chore(data): Fix Sotomayor publication date in name
2023-12-06 10:13:08 +01:00
40a3df132a
chore(repo): Fix links to bibtex file
...
Fixed any relative links to the bibtex file for generating annotations
or similar.
2023-12-05 16:42:20 +01:00
82b0453187
chore(repo): Move supplementary data to data dir
...
Since we now have a 'documentation' directory instead of a
'supplementary-data' one, actual supplementary data should
move to the actual data directory, which is what it does
with this commit.
2023-12-05 16:38:46 +01:00
3482115546
chore(repo): Rename supp data to documentation dir
...
We predominantly keep documentation in here, so that is what it
should be called.
2023-12-05 16:37:43 +01:00
4e3a6da60b
chore(repo): Add output folder to git repository
2023-12-05 16:29:57 +01:00
c7533e01d6
feat(script): Add yaml simple yaml to dataframe loader
...
Ingests all yaml files in the directory, and loads the data for each study.
Currently creates a dataframe for each *observation* in the pool (can be
multiple per study, if a study has multiple analyses for different
independent/dependent vars). This is to follow the tidy data paradigm
of one observation per row.
2023-12-05 16:24:11 +01:00
5b78a7fb1a
feat(data): Extract Debowicz2014, Sotomayor2020
2023-12-05 12:24:58 +01:00
e6b71ed6fc
chore(data): Remove unused intermediate papis lib
2023-12-05 08:15:47 +01:00
5a0f366b24
feat(notes): Add questions for next meeting
2023-12-04 20:34:40 +01:00
42cee69831
chore(data): Begin screening for title and abstract
2023-12-04 20:34:25 +01:00
d69eb0db17
chore(notes): Add year-tracker for screening pool
...
Added simple tracker for years done in the screening pool,
and those still outstanding for now.
2023-12-04 20:33:46 +01:00
e63bf1c99c
feat(notes): Add screening tool with keywords
...
Added a long list of all tags currently in use and
begin explaining what they are used for.
2023-12-04 20:33:07 +01:00
