Commit graph

247 commits

Author SHA1 Message Date
Marty Oehme cc68e83730
fix(script): Improve spelling and wording 2023-12-09 13:04:01 +01:00
Marty Oehme 99672df48f
feat(data): Extract Whitworth2021 2023-12-09 13:03:30 +01:00
Marty Oehme e1bb1b5fc3
feat(data): Extract Al-Mamun2014 2023-12-09 13:03:29 +01:00
Marty Oehme b42838f173
chore(data): Unify intervention categories 2023-12-09 13:03:12 +01:00
Marty Oehme 09e2ae6317
feat(data): Extract Delesalle2021 2023-12-09 13:03:11 +01:00
Marty Oehme 12964bade3
chore(data): Re-integrate previous reviews into bibtex 2023-12-08 15:54:16 +01:00
Marty Oehme 6f1ce1f8b5
chore(script): Add tentative income inequality synthesis organization 2023-12-08 12:38:18 +01:00
Marty Oehme a25e2c4943
chore(code): Add experimental molten notebook 2023-12-08 12:37:43 +01:00
Marty Oehme 0e11920166
fix(data): Fix intervention type tags Blumenberg2014 2023-12-07 22:43:08 +01:00
Marty Oehme ed3d09b3f7
feat(script): Use extracted data for manuscript
For the first time we use the actual final extracted data from relevant studies
to do analysis on instead of just the intermediate Zotero-provided metadata.

We still inject the intermediate metadata where it may be useful (things like
citation counts and keywords) but otherwise switch to the new data.
2023-12-07 22:34:18 +01:00
Marty Oehme e4e7d9e3e4
feat(data): Add publication type to extracted data 2023-12-07 21:40:48 +01:00
Marty Oehme a854794a43
chore(repo): Move scripts to src directory 2023-12-07 21:16:12 +01:00
Marty Oehme 76ff71765c
chore(script): Lowercase all df columns
In preparation for the processed sample renamed all columns to
their lowercase versions.
2023-12-07 20:40:54 +01:00
Marty Oehme d88c733b6d
feat(data): Prepare loading WB country group data 2023-12-07 20:11:27 +01:00
Marty Oehme 8f0f57edcc
feat(script): Begin adding spatial inequality section 2023-12-07 16:56:18 +01:00
Marty Oehme 1589b8c6fb
feat(data): Extract Kuriyama2021 2023-12-07 16:53:51 +01:00
Marty Oehme c96d34e972
feat(data): Extract SilveiraNeto2011 2023-12-07 16:04:26 +01:00
Marty Oehme b7bb04b7dc
feat(data): Extract Gilbert2001 2023-12-07 15:30:33 +01:00
Marty Oehme 7248a07ec1
feat(data): Extract Blumenberg2014 2023-12-07 14:38:16 +01:00
Marty Oehme 343de33552
chore(data): Switch to -1/0/1 coding for impact direction
So we can also express simply no relation between the variables in
any direction.
2023-12-07 14:36:39 +01:00
Marty Oehme 0c70a4a2b1
feat(data): Extract Adam2018 2023-12-07 13:56:23 +01:00
Marty Oehme 446db080f6
chore(code): Refactor yml loading code
Fix for new paths and restructure to have the from_yml and to_tsv
functions in the same data loading file.
Improved path behavior to resolve any paths to absolutes before
loading.
2023-12-07 13:04:29 +01:00
Marty Oehme d3a6b1296b
chore(repo): Move extracted yml data to processed dir
Since it has been processed it should reside in the processed dir
2023-12-07 12:44:00 +01:00
Marty Oehme 4cc1fb8b34
chore(data): Update bib file associations 2023-12-07 12:40:44 +01:00
Marty Oehme 11ce772809
feat(data): Update query to actual WOS undertaken 2023-12-07 11:21:24 +01:00
Marty Oehme 90b23349b4
feat(notes): Ensure notes use embedded query 2023-12-07 11:21:10 +01:00
Marty Oehme 7329540465
feat(script): Move query to imported file
Moved search query to file which is imported and acts as
single source of truth for script, notes, etc.
2023-12-07 11:20:02 +01:00
Marty Oehme 1e4817196c
chore(script): Rename data paths 2023-12-07 11:20:01 +01:00
Marty Oehme 12704e64f5
feat(repo): Add edit task to poe 2023-12-07 11:06:48 +01:00
Marty Oehme 6130c79c53
feat(script): Add first gender annotations 2023-12-07 11:06:10 +01:00
Marty Oehme 9df67f6189
chore(data): Update bibkeys and files 2023-12-07 10:49:25 +01:00
Marty Oehme ce2a231478
feat(data): Extract Stock2021 2023-12-07 10:49:08 +01:00
Marty Oehme 52f9d8635f
feat(repo): Add task runner for common operations
Set up poethepoet for quarto rendering and previewing.
Can be invoked through `poetry preview` or `poetry render`.
Will for now only preview the main scoping review file.
2023-12-07 09:30:16 +01:00
Marty Oehme fae59c5a7d
chore(repo): Update quarto html rendering 2023-12-07 09:21:30 +01:00
Marty Oehme ff4af556a5
feat(scripts): Add figure for intervention and inequality types 2023-12-07 09:05:04 +01:00
Marty Oehme 3a4a7b5621
chore(scripts): Move notes to notes.qmd file
Required for computational cells to be executed by quarto.
Also imported all the standard stuff for python ds to work.
2023-12-06 23:25:42 +01:00
Marty Oehme b7e76b635a
chore(data): Add missing intervention type tags 2023-12-06 21:31:25 +01:00
Marty Oehme 6020d122b6
feat(script): Switch term tables to data driven design
Moved term tables to data directory as csv files and included them
in main script from there, to function as single source of truth.
2023-12-06 17:38:54 +01:00
Marty Oehme 92a1162dce
chore(notes): Notify on source of truth for extraction
Added small note on actual source of truth for extraction data in
data directory.
2023-12-06 17:12:38 +01:00
Marty Oehme e8842144bd
feat(notes): Integrate dynamic inclusion criteria table
Add same source-of-trugh inclusion table as integrated in the main
text, sourced directly form tsv in the data directory.
2023-12-06 17:09:52 +01:00
Marty Oehme 5cb794e1b5
chore(data): Add irrelevant extraction data deGeus2022 2023-12-06 17:06:20 +01:00
Marty Oehme 193f4d3b35
chore(notes): Make screening tool tags lists 2023-12-06 17:05:55 +01:00
Marty Oehme 6cd77a4909
feat(notes): Add global region to tags 2023-12-06 16:56:03 +01:00
Marty Oehme 7a3ed53ea1
fix(script): Correctly import relevant bibtex entries 2023-12-06 16:42:32 +01:00
Marty Oehme 1b660f9621
fix(script): Correct display of inclusion criteria table 2023-12-06 16:42:00 +01:00
Marty Oehme d9cd5fad1a
feat(script): Add dynamic inclusion criteria table
In order to pursue single source of truth, we now
explicitly integrate the inclusion criteria table
from a tsv file in the data directory in the main
manuscript. Other locations should also make use
of that file to create their table.
2023-12-06 16:13:00 +01:00
Marty Oehme b5c0df16e3
feat(script): Add dynamic screening flowchart
Added mermaid flowchart showing the screening numbers, based on
dynamic calculations done at document rendering. Currently missing
some calculations (un-deduplicated numbers and final relevant number).
2023-12-06 16:13:00 +01:00
Marty Oehme c7ac283ad5
feat(data): Unify interventions for childcare subsidy 2023-12-06 16:09:53 +01:00
Marty Oehme b574084023
chore(code): Update live zotero citation plugin 2023-12-06 16:09:47 +01:00
Marty Oehme 46fa835d13
chore(data): Add working sample bibtex to repo data
Added bibtex file containing the up-to-date working sample of the Zotero
library to data/intermediate. It can be used to count sources based on
their keywords such as how many were sorted out during which step,
which regions they belong to and so on.
2023-12-06 16:04:09 +01:00