nvim: Switch python lsp to basedpyright

Switched pyright to basedpyright as it adds a couple noteworthy
rules and some functions that are otherwise exlusive to pylance.

Especially useful for me are semantic highlighting as well as
inlay hints (now that nvim supports it from 0.10 onwards).

nvim/.config/nvim/after/ftplugin/markdown.lua

@@ -1,6 +1,9 @@
 local map = vim.keymap.set
-require("which-key").register({ ["<localleader>c"] = { name = "+md-code" } })
+
-require("which-key").register({ ["<localleader>e"] = { name = "+criticmarkup" } })
+if require("core.util").is_available("which-key") then
+	require("which-key").register({ ["<localleader>c"] = { name = "+codecells" } })
+	require("which-key").register({ ["<localleader>e"] = { name = "+criticmarkup" } })
+end
 
 if require("zk.util").notebook_root(vim.fn.expand("%:p")) ~= nil then
 	map("n", "<CR>", "<cmd>lua vim.lsp.buf.definition()<cr>", { silent = true })

nvim/.config/nvim/after/ftplugin/quarto.lua

@@ -13,7 +13,7 @@ end
 -- Start quarto session
 local startsession = function(file, args)
 	file = file or default_buffer_session()
-	local path = require("util").get_python_venv()
+	local path = require("core.util").get_python_venv()
 	vim.g["python3_host_prog"] = path
 
 	if vim.fn.executable("jupyter-console") ~= 1 then

nvim/.config/nvim/lazy-lock.json

@@ -1,87 +1,92 @@
 {
-  "Arduino.nvim": { "branch": "main", "commit": "fad71572bf7a79b88da38167a756259b03d0c3ef" },
+  "Arduino.nvim": { "branch": "main", "commit": "7fd0f58c6f7a460ef180ef3bc9715baa37e9dd36" },
   "BetterLua.vim": { "branch": "master", "commit": "d2d6c115575d09258a794a6f20ac60233eee59d5" },
   "FixCursorHold.nvim": { "branch": "master", "commit": "1900f89dc17c603eec29960f57c00bd9ae696495" },
-  "LuaSnip": { "branch": "master", "commit": "8ae1dedd988eb56441b7858bd1e8554dfadaa46d" },
+  "LuaSnip": { "branch": "master", "commit": "03c8e67eb7293c404845b3982db895d59c0d1538" },
   "Navigator.nvim": { "branch": "master", "commit": "91d86506ac2a039504d5205d32a1d4bc7aa57072" },
-  "aerial.nvim": { "branch": "master", "commit": "3748e87a316a68754341cdffcef44fee61dee51c" },
+  "aerial.nvim": { "branch": "master", "commit": "4d10acbcb760802ea74381ac3ed98cbb6e5f7805" },
   "bats.vim": { "branch": "master", "commit": "6a5d2ef22b0ede503d867770afd02ebb1f97b709" },
-  "cmp-beancount": { "branch": "main", "commit": "da154ea94d598e6649d6ad01efa0a8611eff460d" },
+  "cmp-beancount": { "branch": "main", "commit": "c8a2533828b84546ae279d60137aec92bd52dc72" },
   "cmp-buffer": { "branch": "main", "commit": "3022dbc9166796b644a841a02de8dd1cc1d311fa" },
-  "cmp-calc": { "branch": "main", "commit": "ce91d14d2e7a8b3f6ad86d85e34d41c1ae6268d9" },
+  "cmp-calc": { "branch": "main", "commit": "5947b412da67306c5b68698a02a846760059be2e" },
-  "cmp-cmdline": { "branch": "main", "commit": "8ee981b4a91f536f52add291594e89fb6645e451" },
+  "cmp-cmdline": { "branch": "main", "commit": "d250c63aa13ead745e3a40f61fdd3470efde3923" },
   "cmp-digraphs": { "branch": "master", "commit": "5efc1f0078d7c5f3ea1c8e3aad04da3fd6e081a9" },
-  "cmp-nvim-lsp": { "branch": "main", "commit": "5af77f54de1b16c34b23cba810150689a3a90312" },
+  "cmp-latex-symbols": { "branch": "main", "commit": "165fb66afdbd016eaa1570e41672c4c557b57124" },
-  "cmp-nvim-lsp-signature-help": { "branch": "main", "commit": "3d8912ebeb56e5ae08ef0906e3a54de1c66b92f1" },
+  "cmp-nvim-lsp": { "branch": "main", "commit": "39e2eda76828d88b773cc27a3f61d2ad782c922d" },
+  "cmp-nvim-lsp-signature-help": { "branch": "main", "commit": "031e6ba70b0ad5eee49fd2120ff7a2e325b17fa7" },
   "cmp-nvim-lua": { "branch": "main", "commit": "f12408bdb54c39c23e67cab726264c10db33ada8" },
   "cmp-pandoc-references": { "branch": "master", "commit": "2c808dff631a783ddd2c554c4c6033907589baf6" },
   "cmp-path": { "branch": "main", "commit": "91ff86cd9c29299a64f968ebb45846c485725f23" },
   "cmp-rg": { "branch": "master", "commit": "677a7874ee8f1afc648c2e7d63a97bc21a7663c5" },
-  "cmp-spell": { "branch": "master", "commit": "32a0867efa59b43edbb2db67b0871cfad90c9b66" },
+  "cmp-spell": { "branch": "master", "commit": "694a4e50809d6d645c1ea29015dad0c293f019d6" },
-  "cmp-treesitter": { "branch": "master", "commit": "13e4ef8f4dd5639fca2eb9150e68f47639a9b37d" },
+  "cmp-tmux": { "branch": "main", "commit": "95b1b921802e6f60627b3e76afb9380fddd87f9a" },
+  "cmp-treesitter": { "branch": "master", "commit": "958fcfa0d8ce46d215e19cc3992c542f576c4123" },
   "cmp_luasnip": { "branch": "master", "commit": "05a9ab28b53f71d1aece421ef32fee2cb857a843" },
   "completion-vcard": { "branch": "master", "commit": "2220fd517a985ececed1adcf0e5be8f2815564c7" },
-  "conform.nvim": { "branch": "master", "commit": "3d59cbd01a4b74124c5a6fb23b8cc63e5c2db3d5" },
+  "conform.nvim": { "branch": "master", "commit": "9b26e81c4292106e68dda3e7b64473434fd5b3e0" },
   "dial.nvim": { "branch": "master", "commit": "54b503f906bc9e5ab85288414840a1b86d40769f" },
-  "dressing.nvim": { "branch": "master", "commit": "42d767b04c50a6966c9633e3968bc65c0c2f2bfc" },
+  "dressing.nvim": { "branch": "master", "commit": "572314728cb1ce012e825fd66331f52c94acac12" },
-  "fidget.nvim": { "branch": "main", "commit": "a3e1e79116ceb93d4c8c0ff432bf506b3213a24d" },
+  "fidget.nvim": { "branch": "main", "commit": "ef99df04a1c53a453602421bc0f756997edc8289" },
-  "friendly-snippets": { "branch": "main", "commit": "b8fae73a479ae0a1c54f5c98fa687ae8a0addc53" },
+  "flash.nvim": { "branch": "main", "commit": "7bb4a9c75d1e20cd24185afedeaa11681829ba23" },
+  "friendly-snippets": { "branch": "main", "commit": "e11b09bf10706bb74e16e4c3d11b2274d62e687f" },
   "fwatch.nvim": { "branch": "main", "commit": "a691f7349dc66285cd75a1a698dd28bca45f2bf8" },
-  "git-conflict.nvim": { "branch": "main", "commit": "4c8e252b87d54d944c1e56bfb477f78b6fdaf661" },
+  "git-conflict.nvim": { "branch": "main", "commit": "bfd9fe6fba9a161fc199771d85996236a0d0faad" },
-  "gitsigns.nvim": { "branch": "main", "commit": "6ef8c54fb526bf3a0bc4efb0b2fe8e6d9a7daed2" },
+  "gitsigns.nvim": { "branch": "main", "commit": "76927d14d3fbd4ba06ccb5246e79d93b5442c188" },
-  "glance.nvim": { "branch": "master", "commit": "8ed5cf3b3b1231ea696d88c9efd977027429d869" },
+  "glance.nvim": { "branch": "master", "commit": "51059bcf21016387b6233c89eed220cf47fca752" },
-  "headlines.nvim": { "branch": "master", "commit": "d39c4e6ed8963717bc9b2dc39fada8fe1039e9bf" },
+  "headlines.nvim": { "branch": "master", "commit": "618ef1b2502c565c82254ef7d5b04402194d9ce3" },
-  "image.nvim": { "branch": "master", "commit": "9b6248bd8b58b505559e31eb581b7c4638369ec3" },
+  "image.nvim": { "branch": "master", "commit": "da64ce69598875c9af028afe129f916b02ccc42e" },
-  "lazy.nvim": { "branch": "main", "commit": "28126922c9b54e35a192ac415788f202c3944c9f" },
+  "lazy.nvim": { "branch": "main", "commit": "b0ba3f9399bf48c86abaa4db1a40bd0b681d5018" },
-  "lightspeed.nvim": { "branch": "main", "commit": "fcc72d8a4d5f4ebba62d8a3a0660f88f1b5c3b05" },
+  "lsp-setup.nvim": { "branch": "main", "commit": "6e4e977512ce426d8b52c27f3b6e6aefc73e1452" },
-  "lsp-setup.nvim": { "branch": "main", "commit": "22ba14fb5c4208fd93f616d7b99bb47656e6e144" },
+  "lualine.nvim": { "branch": "master", "commit": "0a5a66803c7407767b799067986b4dc3036e1983" },
-  "lualine.nvim": { "branch": "master", "commit": "7d131a8d3ba5016229e8a1d08bf8782acea98852" },
   "markdown-preview.nvim": { "branch": "master", "commit": "9becceee5740b7db6914da87358a183ad11b2049" },
-  "markmap.nvim": { "branch": "main", "commit": "3befc2a54c2448a16c30c1c7762aab263f22946a" },
+  "markmap.nvim": { "branch": "main", "commit": "5fb6755cf5434511cc23a4936c9eb76b9142fba5" },
-  "mason-lspconfig.nvim": { "branch": "main", "commit": "56e435e09f8729af2d41973e81a0db440f8fe9c9" },
+  "mason-lspconfig.nvim": { "branch": "main", "commit": "9ae570e206360e47d30b4c35a4550c165f4ea7b7" },
-  "mason-tool-installer.nvim": { "branch": "main", "commit": "bf0f4f8062d3acbe0afcc61db01a4d19d96310e4" },
+  "mason-tool-installer.nvim": { "branch": "main", "commit": "c5e07b8ff54187716334d585db34282e46fa2932" },
   "mason.nvim": { "branch": "main", "commit": "c43eeb5614a09dc17c03a7fb49de2e05de203924" },
-  "mini.nvim": { "branch": "main", "commit": "b5645ac6eefce8e7af9d7dd4e5e296a81cba8a10" },
+  "mdeval.nvim": { "branch": "master", "commit": "2c32e2f3e7d8f222e7a4724989f218d036e1081d" },
-  "molten-nvim": { "branch": "main", "commit": "21d766c2d60e5f6e03f507e7f3e382a2a927ad41" },
+  "mini.nvim": { "branch": "main", "commit": "f24747266a047617d06605a2316aa6c071662fa2" },
-  "neogen": { "branch": "main", "commit": "cb1f384df804c1bf729332c4f728253fe17962d4" },
+  "molten-nvim": { "branch": "main", "commit": "df5ccef3b6fda3582f7746e45327ee031f668826" },
-  "neotest": { "branch": "master", "commit": "b47c99265253f0a31a428b698c59ec0bc956e78d" },
+  "neogen": { "branch": "main", "commit": "0daffcec249bf42275e322361fe55b89a05ff278" },
+  "neotest": { "branch": "master", "commit": "6f35d797882c6ce0ab7c87dc86561512dc3d7aba" },
   "neotest-python": { "branch": "master", "commit": "81d2265efac717bb567bc15cc652ae10801286b3" },
-  "nvim-cmp": { "branch": "main", "commit": "04e0ca376d6abdbfc8b52180f8ea236cbfddf782" },
+  "nvim-FeMaco.lua": { "branch": "main", "commit": "96bbf843595dbe865838b3f2484b73557f34700c" },
+  "nvim-cmp": { "branch": "main", "commit": "5260e5e8ecadaf13e6b82cf867a909f54e15fd07" },
   "nvim-colorizer.lua": { "branch": "master", "commit": "85855b38011114929f4058efc97af1059ab3e41d" },
-  "nvim-coverage": { "branch": "main", "commit": "cf4b5c61dfac977026a51a2bcad9173c272986ce" },
+  "nvim-coverage": { "branch": "main", "commit": "aa4b4400588e2259e87e372b1e4e90ae13cf5a39" },
-  "nvim-lint": { "branch": "master", "commit": "966ab3dc37eee3e413692264b44a3011b05a6060" },
+  "nvim-lint": { "branch": "master", "commit": "1a3a8d047bc01f1760ae4a0f5e80f111ea222e67" },
-  "nvim-lspconfig": { "branch": "master", "commit": "41f40dc4b86f3e166cf08115f621001972565a20" },
+  "nvim-lspconfig": { "branch": "master", "commit": "d1ab6b6051976b04948e127b0f302a465b1394d6" },
-  "nvim-surround": { "branch": "main", "commit": "703ec63aa798e5e07d309b35e42def34bebe0174" },
+  "nvim-nio": { "branch": "master", "commit": "8765cbc4d0c629c8158a5341e1b4305fd93c3a90" },
-  "nvim-toggleterm.lua": { "branch": "main", "commit": "cbd041d91b90cd3c02df03fe6133208888f8e008" },
+  "nvim-surround": { "branch": "main", "commit": "f1f0699a1d49f28e607ffa4361f1bbe757ac5ebc" },
-  "nvim-tree.lua": { "branch": "master", "commit": "f1b3e6a7eb92da492bd693257367d9256839ed3d" },
+  "nvim-toggleterm.lua": { "branch": "main", "commit": "066cccf48a43553a80a210eb3be89a15d789d6e6" },
+  "nvim-tree.lua": { "branch": "master", "commit": "2bc725a3ebc23f0172fb0ab4d1134b81bcc13812" },
   "nvim-treesitter": { "branch": "master", "commit": "f197a15b0d1e8d555263af20add51450e5aaa1f0" },
-  "nvim-treesitter-context": { "branch": "master", "commit": "9c06b115abc57c99cf0aa81dc29490f5001f57a1" },
+  "nvim-treesitter-context": { "branch": "master", "commit": "5efba33af0f39942e426340da7bc15d7dec16474" },
-  "nvim-treesitter-endwise": { "branch": "master", "commit": "4c344ffc8d54d7e1ba2cefaaa2c10ea93aa1cc2d" },
+  "nvim-treesitter-endwise": { "branch": "master", "commit": "8b34305ffc28bd75a22f5a0a9928ee726a85c9a6" },
-  "nvim-treesitter-textsubjects": { "branch": "master", "commit": "55d11124c45e9bb506703f73e5775652ed5357e9" },
+  "nvim-treesitter-textsubjects": { "branch": "master", "commit": "1428108f18ce9d8cc4481dcedebeeb490eabf395" },
-  "nvim-ts-autotag": { "branch": "main", "commit": "531f48334c422222aebc888fd36e7d109cb354cd" },
+  "nvim-ts-autotag": { "branch": "main", "commit": "6eb4120a1aadef07ac312f1c4bc6456712220007" },
-  "nvim-ts-context-commentstring": { "branch": "main", "commit": "7ab799a9792f7cf3883cf28c6a00ad431f3d382a" },
+  "nvim-ts-context-commentstring": { "branch": "main", "commit": "cb064386e667def1d241317deed9fd1b38f0dc2e" },
-  "nvim-ts-rainbow2": { "branch": "master", "commit": "b3120cd5ae9ca524af9cb602f41e12e301fa985f" },
+  "nvim-web-devicons": { "branch": "master", "commit": "5b9067899ee6a2538891573500e8fd6ff008440f" },
-  "nvim-web-devicons": { "branch": "master", "commit": "a55b801b7ef5719ca25692c3a0a5447fdfb692ed" },
+  "otter.nvim": { "branch": "main", "commit": "5cd161f28835fada50d99c89dc05041565a27bdb" },
-  "otter.nvim": { "branch": "main", "commit": "cf29fc255bce78fd03565b40722438c0ab3ce05d" },
   "plenary.nvim": { "branch": "master", "commit": "50012918b2fc8357b87cff2a7f7f0446e47da174" },
   "popup.nvim": { "branch": "master", "commit": "b7404d35d5d3548a82149238289fa71f7f6de4ac" },
-  "quarto-nvim": { "branch": "main", "commit": "0a35b3890e9d723b730506d7d8b3ba3d0d6aae2e" },
+  "quarto-nvim": { "branch": "main", "commit": "67e09027b5d8bd948907734fc6fb15028ffdcd28" },
+  "rainbow-delimiters.nvim": { "branch": "master", "commit": "12b1a1e095d968887a17ef791c2edb78d7595d46" },
   "smartcolumn.nvim": { "branch": "main", "commit": "d01b99355c7fab13233f48d0f28dc097e68a03f7" },
   "stickybuf.nvim": { "branch": "master", "commit": "2160fcd536d81f5fa43f7167dba6634e814e3154" },
-  "telescope-fzf-native.nvim": { "branch": "main", "commit": "6c921ca12321edaa773e324ef64ea301a1d0da62" },
+  "telescope-fzf-native.nvim": { "branch": "main", "commit": "9ef21b2e6bb6ebeaf349a0781745549bbb870d27" },
-  "telescope.nvim": { "branch": "master", "commit": "d90956833d7c27e73c621a61f20b29fdb7122709" },
+  "telescope.nvim": { "branch": "master", "commit": "a0bbec21143c7bc5f8bb02e0005fa0b982edc026" },
-  "trouble.nvim": { "branch": "main", "commit": "f1168feada93c0154ede4d1fe9183bf69bac54ea" },
+  "trouble.nvim": { "branch": "main", "commit": "46a19388d3507f4c4bebb9994bf821a79b3bc342" },
   "twilight.nvim": { "branch": "main", "commit": "8bb7fa7b918baab1ca81b977102ddb54afa63512" },
   "undotree": { "branch": "main", "commit": "eab459ab87dd249617b5f7187bb69e614a083047" },
   "vifm.vim": { "branch": "master", "commit": "a8130c37d144b51d84bee19f0532abcd3583383f" },
   "vim-criticmarkup": { "branch": "master", "commit": "d15dc134eb177a170c79f6377f81eb02a9d20b02" },
   "vim-easy-align": { "branch": "master", "commit": "0db4ea6132110631ec678a99a82aa49a0686ae65" },
-  "vim-exchange": { "branch": "master", "commit": "d6c1e9790bcb8df27c483a37167459bbebe0112e" },
   "vim-numbertoggle": { "branch": "main", "commit": "df9b1fe616507340718716204ba7f434125bdf7a" },
   "vim-pandoc-syntax": { "branch": "master", "commit": "16939cda184ff555938cc895cc62477c172997f9" },
+  "vim-scimark": { "branch": "master", "commit": "9b66a88fa4bb87b8baab3c4aecc43b985b32e7fd" },
   "vim-spellsync": { "branch": "master", "commit": "3d6dd50de9c4d953cc16638112a6ae196df41463" },
-  "which-key.nvim": { "branch": "main", "commit": "ce741eb559c924d72e3a67d2189ad3771a231414" },
+  "which-key.nvim": { "branch": "main", "commit": "4b7167f8fb2dba3d01980735e3509e172c024c29" },
-  "wrapping.nvim": { "branch": "master", "commit": "5e87f1424c86c50d3bc205830aa56ed1cad45467" },
+  "wrapping.nvim": { "branch": "master", "commit": "3a823200c297885b70515fa8d974e1763c578e26" },
   "zen-mode.nvim": { "branch": "main", "commit": "cb73b8bd0ef9d765b942db09dc762c603a89ae44" },
-  "zk-nvim": { "branch": "main", "commit": "fb0962b75a680561f94cae0588b8da92ea8d2fae" }
+  "zk-nvim": { "branch": "main", "commit": "66b9b490e930fb77f93a2a0c64e0da9a5144fd0a" }
 }

nvim/.config/nvim/lua/core/mappings.lua

@@ -1,5 +1,5 @@
 local map = vim.keymap.set
-local is_available = require("util").is_available
+local is_available = require("core.util").is_available
 
 if is_available("which-key") then
     local prefix = require("which-key").register

nvim/.config/nvim/lua/core/util.lua

@@ -1,17 +1,32 @@
 local T = {}
-local exepath = vim.fn.exepath
 
-local function path_join(...)
+-- from astronvim util function
-return table.concat(vim.tbl_flatten { ... }, '/')
+--- Check if a plugin is defined in lazy. Useful with lazy loading when a plugin is not necessarily loaded yet
+---@param plugin string The plugin to search for
+---@return boolean available # Whether the plugin is available
+function T.is_available(plugin)
+	return T.get_plugin(plugin) and true or false
+end
+
+-- Get the plugin file handle if it exists, return nil otherwise
+function T.get_plugin(plugin)
+	local status, lib = pcall(require, plugin)
+	if status then
+		return lib
+	end
+	return nil
 end
 
 -- from https://github.com/ray-x/navigator.lua/issues/247#issue-1465308677
-T.get_path = function(workspace)
+local function path_join(...)
+	return table.concat(vim.tbl_flatten({ ... }), "/")
+end
+-- return the current python environment path
+function T.get_python_venv(workspace)
 	-- Use activated virtualenv.
 	if vim.env.VIRTUAL_ENV then
 		return path_join(vim.env.VIRTUAL_ENV, "bin", "python")
 	end
-
 	-- Find and use virtualenv in workspace directory.
 	for _, pattern in ipairs({ "*", ".*" }) do
 		local match = vim.fn.glob(path_join(workspace, pattern, "pyvenv.cfg"))
@@ -26,9 +41,8 @@ T.get_path = function(workspace)
 			return path_join(venv_base_folder, "bin", "python")
 		end
 	end
-
 	-- Fallback to system Python.
-	return exepath("python3") or exepath("python") or "python"
+	return vim.fn.exepath("python3") or vim.fn.exepath("python") or "python"
 end
 
 return T

nvim/.config/nvim/lua/plugins/config/cmp.lua

@@ -42,11 +42,6 @@ cmp.setup({
 		end,
 	},
 	sources = {
-		{ name = "nvim_lsp" },
-		{ name = "nvim_lsp_signature_help" },
-		{ name = "otter" },
-		{ name = "luasnip", keyword_length = 2 },
-		{ name = "pandoc_references" },
 		{ name = "nvim_lua" },
 		{
 			name = "beancount",
@@ -54,6 +49,11 @@ cmp.setup({
 				account = vim.env["HOME"] .. "/documents/records/budget/main.beancount", -- TODO implement dynamically
 			},
 		},
+		{ name = "otter" },
+		{ name = "nvim_lsp" },
+		{ name = "nvim_lsp_signature_help" },
+		{ name = "luasnip", keyword_length = 2 },
+		{ name = "pandoc_references" },
 		{ name = "calc" },
 		{ name = "path" },
 		{ name = "buffer", keyword_length = 3 },
@@ -61,7 +61,7 @@ cmp.setup({
 		{ name = "spell", keyword_length = 3 },
 		{ name = "tmux" }, -- { name = 'rg',           keyword_length = 5 },
 		{ name = "vCard" },
-		{ name = "digraphs" },
+		{ name = "digraphs", keyword_length = 2 },
 	},
 	mapping = cmp.mapping.preset.insert({
 		["<C-b>"] = cmp.mapping.scroll_docs(-4),
@@ -117,10 +117,10 @@ cmp.setup({
 			vim_item.menu = ({
 				buffer = "",
 				calc = "󰃬",
-				digraphs = "",
+				digraphs = "∬",
-				latex_symbols = "󰊄",
+				latex_symbols = "𝓧",
 				luasnip = "",
-				nvim_lsp = "",
+				nvim_lsp = "ℒ",
 				nvim_lua = "󰢱",
 				pandoc_references = "",
 				spell = "󰓆",

nvim/.config/nvim/lua/plugins/config/lsp.lua

@@ -33,7 +33,7 @@ local servers = {
 	marksman = {
 		filetypes = { "markdown", "quarto" },
 	},
-	pyright = {},
+	basedpyright = {},
 	ruff_lsp = {},
 	serve_d = {},
 	tailwindcss = {},
@@ -77,6 +77,9 @@ local function on_attach(client, bufnr)
 		"<cmd>lua vim.diagnostic.open_float()<cr>",
 		{ buffer = bufnr, desc = "Line diagnostics" }
 	)
+	map("n", "<localleader>li", function()
+		vim.lsp.inlay_hint.enable(not vim.lsp.inlay_hint.is_enabled())
+	end, { buffer = bufnr, desc = "Inlay hints" })
 	map("n", "<localleader>la", "<cmd>lua vim.lsp.buf.code_action()<cr>", { buffer = bufnr, desc = "Codeactions" })
 	map("n", "<localleader>ln", "<cmd>lua vim.lsp.buf.rename()<cr>", { buffer = bufnr, desc = "Rename element" })
 	if vim.fn.exists(":Glance") then
@@ -159,12 +162,13 @@ lspconfig.nushell.setup({})
 
 local python_path
 -- ensure python virtualenv is determined automatically on lsp start
-lspconfig.pyright.setup({
+lspconfig.basedpyright.setup({
 	on_attach = function(client, bufnr)
 		if python_path == nil then
-			python_path, _ = require("util").get_python_venv(client.config.root_dir)
+			python_path, _ = require("core.util").get_python_venv(client.config.root_dir)
 		end
 		-- print(string.format("[PYTHON VENV]: %s", vim.inspect(python_path)))
+		client.config.settings.python = {} or client.config.settings.python
 		client.config.settings.python.pythonPath = python_path
 		on_attach(client, bufnr)
 	end,
@@ -173,14 +177,15 @@ lspconfig.ruff_lsp.setup({
 	on_attach = function(client, bufnr)
 		on_attach(client, bufnr)
 		if python_path == nil then
-			python_path, _ = require("util").get_python_venv(client.config.root_dir)
+			python_path, _ = require("core.util").get_python_venv(client.config.root_dir)
 		end
+		client.config.settings.python = {} or client.config.settings.python
 		client.config.settings.python.pythonPath = python_path
 	end,
 })
 
 -- set up arduino with the help of arduino.nvim plugin
-if require("util").is_available("arduino") then
+if require("core.util").is_available("arduino") then
 	lspconfig.arduino_language_server.setup({
 		on_new_config = require("arduino").on_new_config,
 	})

nvim/.config/nvim/lua/plugins/core.lua

@@ -51,7 +51,7 @@ return {
 		keys = {
 			{
 				"s",
-				mode = { "n", "x", "o" },
+				mode = { "n", "x" },
 				function()
 					require("flash").jump()
 				end,
@@ -73,22 +73,6 @@ return {
 				end,
 				desc = "Remote Flash",
 			},
-			{
-				"R",
-				mode = { "o", "x" },
-				function()
-					require("flash").treesitter_search()
-				end,
-				desc = "Treesitter Search",
-			},
-			{
-				"<c-s>",
-				mode = { "c" },
-				function()
-					require("flash").toggle()
-				end,
-				desc = "Toggle Flash Search",
-			},
 		},
 	},
 
@@ -127,7 +111,7 @@ return {
 				hooks = {
 					pre = function()
 						-- use treesitter commentstring functionality if it's installed
-						if require("util").is_available("ts_context_commentstring") then
+						if require("core.util").is_available("ts_context_commentstring") then
 							require("ts_context_commentstring.internal").update_commentstring()
 						end
 					end,

nvim/.config/nvim/lua/plugins/data_analysis.lua

@@ -81,6 +81,18 @@ return {
 			{ "<leader>vn", ":MoltenInfo<cr>" },
 		},
 	},
+	-- Edit code blocks in md/quarto using whatever language is
+	{
+		"AckslD/nvim-FeMaco.lua",
+		cmd = {
+			"FeMaco",
+		},
+		ft = { "markdown", "quarto" },
+		opts = {},
+		dependencies = {
+			"nvim-treesitter/nvim-treesitter",
+		},
+	},
 
 	-- MARKDOWN ONLY
 	-- Evaluate markdown code blocks
@@ -96,12 +108,4 @@ return {
 		},
 		lazy = false,
 	},
-	{
-		"AckslD/nvim-FeMaco.lua",
-		cmd = {
-			"FeMaco",
-		},
-		ft = { "markdown" },
-		config = true,
-	},
 }

nvim/.config/nvim/lua/plugins/ide.lua

@@ -22,7 +22,9 @@ local formatters = {
 	javascript = { { "prettierd", "prettier" } },
 	javascriptreact = { { "prettierd", "prettier" } },
 	json = { "jq" },
+	liquid = { { "prettierd", "prettier" } },
 	lua = { "stylua" },
+	markdown = { { "prettierd", "prettier" } },
 	python = { "ruff_fix", "ruff_format" },
 	sh = { "shfmt" },
 	svelte = { { "prettierd", "prettier" } },
@@ -123,7 +125,7 @@ return {
 				end,
 			})
 		end,
-		event = { "BufWritePost", "InsertLeave" },
+		event = { "BufWritePre", "InsertEnter" },
 	},
 
 	-- formatting setup
@@ -248,6 +250,7 @@ return {
 		"nvim-neotest/neotest",
 		dependencies = {
 			"nvim-lua/plenary.nvim",
+			"nvim-neotest/nvim-nio",
 			"nvim-treesitter/nvim-treesitter",
 			"antoinemadec/FixCursorHold.nvim",
 
@@ -262,7 +265,7 @@ return {
 					}),
 				},
 			})
-			if require("util").is_available("which-key") then
+			if require("core.util").is_available("which-key") then
 				require("which-key").register({ ["<localleader>t"] = { name = "+test" } })
 			end
 		end,

nvim/.config/nvim/lua/plugins/prose.lua

@@ -60,7 +60,7 @@ local prose_plugs = {
 	{
 		"mickael-menu/zk-nvim",
 		config = function()
-			if require("util").is_available("which-key") then
+			if require("core.util").is_available("which-key") then
 				local prefix = require("which-key").register
 				prefix({ ["<leader>n"] = { name = "+notes" } })
 				prefix({ ["<localleader>n"] = { name = "+note" } })
@@ -71,7 +71,15 @@ local prose_plugs = {
 					require("zk").edit(opts, { title = "Zk Orphans" })
 				end)
 			end
-			require("zk").setup({ picker = "telescope" })
+			require("zk").setup({
+				picker = "telescope",
+				lsp = {
+					auto_attach = {
+						enabled = true,
+						filteypes = { "markdown", "quarto" },
+					},
+				},
+			})
 		end,
 		ft = writing_ft,
 		cmd = {

nvim/.config/nvim/lua/plugins/telescope.lua

@@ -9,7 +9,7 @@ return {
 		},
 		cmd = "Telescope",
 		config = function()
-			if require("util").is_available("which-key") then
+			if require("core.util").is_available("which-key") then
 				require("which-key").register({ ["<leader>f"] = { name = "+find" } })
 			end
 			-- Setup up telescope fuzzy finding settings

nvim/.config/nvim/lua/plugins/ui.lua

@@ -3,7 +3,18 @@ return {
 	{
 		"nvim-lualine/lualine.nvim",
 		requires = { "nvim-tree/nvim-web-devicons", config = true },
-		opts = {
+		config = function()
+		    -- FIXME: Errors out on no pynvim installed
+			-- local function molten()
+			-- 	if
+			-- 		require("core.util").is_available("molten.status")
+			-- 		and require("molten.status").initialized() ~= ""
+			-- 	then
+			-- 		return "󱪄"
+			-- 	end
+			-- 	return ""
+			-- end
+			require("lualine").setup({
 				options = {
 					icons_enabled = true,
 					theme = "auto",
@@ -16,7 +27,7 @@ return {
 					lualine_a = { "mode" },
 					lualine_b = { "branch", "diff", "diagnostics" },
 					lualine_c = { "filename" },
-				lualine_x = { "encoding", "fileformat", "filetype" },
+					lualine_x = { "encoding", "fileformat", "filetype", "molten" },
 					lualine_y = { "progress" },
 					lualine_z = { "location" },
 				},
@@ -30,7 +41,8 @@ return {
 				},
 				tabline = {},
 				extensions = { "quickfix", "toggleterm" },
-		},
+			})
+		end,
 		event = { "BufNewFile", "BufAdd", "BufWinEnter" },
 	},
 	-- create pretty unobtrusive notifications
@@ -124,7 +136,7 @@ return {
 			local Terminal = require("toggleterm.terminal").Terminal
 
 			-- need to disable indentlines since they obscure first line of terminal
-			if require("util").is_available("mini.nvim") then
+			if require("core.util").is_available("mini.nvim") then
 				vim.api.nvim_create_autocmd({ "TermOpen" }, {
 					pattern = "*",
 					callback = function()

nvim/.config/nvim/lua/util/highlight.lua

@@ -1,17 +0,0 @@
--- helper for easily defining highlight groups
---
--- usage example - italicize comments:
--- set_hl("Comment", { gui = "italic" })
-return function(group, options)
-	local bg = options.bg == nil and "" or "guibg=" .. options.bg
-	local fg = options.fg == nil and "" or "guifg=" .. options.fg
-	local gui = options.gui == nil and "" or "gui=" .. options.gui
-	local link = options.link or false
-	local target = options.target
-
-	if not link then
-		vim.cmd(string.format("hi %s %s %s %s", group, bg, fg, gui))
-	else
-		vim.cmd(string.format("hi! link", group, target))
-	end
-end

nvim/.config/nvim/lua/util/init.lua

@@ -1,24 +0,0 @@
-local T = {}
-
--- from astronvim util function
---- Check if a plugin is defined in lazy. Useful with lazy loading when a plugin is not necessarily loaded yet
----@param plugin string The plugin to search for
----@return boolean available # Whether the plugin is available
-function T.is_available(plugin)
-	return T.get_plugin(plugin) and true or false
-end
-
--- Get the plugin file handle if it exists, return nil otherwise
-function T.get_plugin(plugin)
-    local status, lib = pcall(require, plugin)
-    if(status) then return lib end
-    return nil
-end
-
--- get the current python environment
--- return its path
-function T.get_python_venv(workspace)
-	return require("util.pyenv").get_path(workspace)
-end
-
-return T