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refactor(code): Shorten data preparation

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This commit is contained in:
Marty Oehme 2024-02-17 17:35:04 +01:00
parent b89ab5f5d9
commit 67fa885cdd
Signed by: Marty
GPG key ID: EDBF2ED917B2EF6A
1 changed files with 3 additions and 22 deletions
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scoping_review.qmd
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@ -27,17 +27,6 @@ import seaborn as sns
from tabulate import tabulate from tabulate import tabulate
import bibtexparser import bibtexparser
from contextlib import contextmanager
import logging
@contextmanager
def all_logging_disabled(highest_level=logging.CRITICAL):
previous_level = logging.root.manager.disable
logging.disable(highest_level)
try:
yield
finally:
logging.disable(previous_level)
sns.set_style("whitegrid") sns.set_style("whitegrid")
DATA_DIR=Path("./02-data") DATA_DIR=Path("./02-data")
@ -55,23 +44,15 @@ bib_sample = prep_data.bib_library_from_dir(WORKING_DATA)
# load relevant studies # load relevant studies
from src import load_data from src import load_data
raw_observations_df = load_data.from_yml(PROCESSED_DATA)
# load zotero-based metadata: citations and uses
zot_df = prep_data.bib_metadata_df(bib_sample)
# Add WB country grouping definitions (income group, world region)
df_country_groups = prep_data.country_groups_df(Path(f"{SUPPLEMENTARY_DATA}/wb-country-groupings.xlsx"))
bib_df = prep_data.observations_with_metadata_df( bib_df = prep_data.observations_with_metadata_df(
raw_observations = raw_observations_df, raw_observations = load_data.from_yml(PROCESSED_DATA),
study_metadata = zot_df, study_metadata = prep_data.bib_metadata_df(bib_sample),
country_groups = df_country_groups country_groups = prep_data.country_groups_df(Path(f"{SUPPLEMENTARY_DATA}/wb-country-groupings.xlsx")),
) )
raw_observations = None raw_observations = None
zot_df = None zot_df = None
df_country_groups = None df_country_groups = None
``` ```
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