diff --git a/scoping_review.qmd b/scoping_review.qmd index afc2c3f..6096ae6 100644 --- a/scoping_review.qmd +++ b/scoping_review.qmd @@ -27,17 +27,6 @@ import seaborn as sns from tabulate import tabulate import bibtexparser -from contextlib import contextmanager -import logging -@contextmanager -def all_logging_disabled(highest_level=logging.CRITICAL): - previous_level = logging.root.manager.disable - logging.disable(highest_level) - try: - yield - finally: - logging.disable(previous_level) - sns.set_style("whitegrid") DATA_DIR=Path("./02-data") @@ -55,23 +44,15 @@ bib_sample = prep_data.bib_library_from_dir(WORKING_DATA) # load relevant studies from src import load_data -raw_observations_df = load_data.from_yml(PROCESSED_DATA) - -# load zotero-based metadata: citations and uses -zot_df = prep_data.bib_metadata_df(bib_sample) - -# Add WB country grouping definitions (income group, world region) -df_country_groups = prep_data.country_groups_df(Path(f"{SUPPLEMENTARY_DATA}/wb-country-groupings.xlsx")) bib_df = prep_data.observations_with_metadata_df( - raw_observations = raw_observations_df, - study_metadata = zot_df, - country_groups = df_country_groups + raw_observations = load_data.from_yml(PROCESSED_DATA), + study_metadata = prep_data.bib_metadata_df(bib_sample), + country_groups = prep_data.country_groups_df(Path(f"{SUPPLEMENTARY_DATA}/wb-country-groupings.xlsx")), ) raw_observations = None zot_df = None df_country_groups = None - ```