wezterm: Style tabbar with flavours

Switching from my custom, brittle, styling implementation `styler` to
the wonder `flavours` program which does exactly the same only with more
clarity, faster and - I would presume - more stable.

bootstrap/packages_stable.tsv

@@ -7,7 +7,7 @@ alsa-utils	Advanced Linux Sound Architecture - Utilities	R
 anki	Helps you remember facts (like words/phrases in a foreign language) efficiently	A	
 ansible	Official assortment of Ansible collections	R	
 ansible-lint	Checks playbooks for practices and behaviour that could potentially be improved.	R	
-arch-wiki-lite	The wiki without html. 1/9 as big, easily searched and viewable on console.	R	
+arch-wiki-lite	Arch Wiki without HTML. 1/9 as big, easily searched & viewable on console	R	
 arduino	Arduino prototyping platform SDK	R	
 arduino-avr-core	Arduino AVR core with upstream avr-gcc and avrdude	R	
 arduino-cli	Arduino command line interface	R	
@@ -68,6 +68,7 @@ fasd	Command-line productivity booster, offers quick access to files and directo
 fd	Simple, fast and user-friendly alternative to find	R	
 ffmpegthumbnailer	Lightweight video thumbnailer that can be used by file managers	R	
 firefox	Standalone web browser from mozilla.org	R	
+flavours	A simple and easy cli to build and use base16 schemes	A	
 fonts-cjk	Linux 下的免费商用字体包	A	
 freerdp	Free implementation of the Remote Desktop Protocol (RDP)	R	
 fwupd	Simple daemon to allow session software to update firmware	R	
@@ -120,6 +121,7 @@ kubo	IPFS implementation in Go	R
 lazygit	Simple terminal UI for git commands	R	
 lib32-gamemode	A daemon/lib combo that allows games to request a set of optimisations be temporarily applied to the host OS	R	
 libdvdcss	Portable abstraction library for DVD decryption	R	
+libfido2	Library functionality for FIDO 2.0, including communication with a device over USB	R	
 libqalculate	Multi-purpose desktop calculator	R	
 libreoffice-fresh	LibreOffice branch which contains new features and program enhancements	R	
 libva-intel-driver	VA-API implementation for Intel G45 and HD Graphics family	R	
@@ -295,7 +297,7 @@ transmission-qt	Fast, easy, and free BitTorrent client (Qt GUI)	R
 ttf-brill	Brill Typeface by John Hudson for Brill Publishing House	A	
 ttf-comic-neue	Comic Neue aspires to be the casual script choice for everyone including the typographically savvy.	A	
 ttf-heuristica	A serif latin & cyrillic font, derived from the "Adobe Utopia" font by Apanov	A	
-ttf-iosevka-nerd	Typeface family designed for coding, terminal use and technical documents (Nerd Fonts)	R	
+ttf-iosevka-nerd	Patched font Iosevka from nerd fonts library	R	
 ttf-signika	Sans-serif typeface from Google by Anna Giedryś	A	
 tuir	Browse Reddit from your terminal	A	
 tut	A TUI for Mastodon with vim inspired keys	A	
@@ -321,7 +323,7 @@ visidata	Terminal spreadsheet multitool for discovering and arranging data	R
 wallabag-client	Command line client for the self hosted read-it-later app Wallabag	A	
 wavemon	Ncurses-based monitoring application for wireless network devices	R	
 waybar	Highly customizable Wayland bar for Sway and Wlroots based compositors	R	
-waylock-git	A simple screenlocker for Wayland compositors	A	
+waylock	A simple screenlocker for wayland compositors	R	
 wdisplays	GUI display configurator for wlroots compositors	A	
 wev	tool for debugging wayland events, similar to xev	A	
 wezterm	A GPU-accelerated cross-platform terminal emulator and multiplexer	R	
@@ -336,6 +338,7 @@ xdg-user-dirs	Manage user directories like ~/Desktop and ~/Music	R
 xsv	A CLI for indexing, slicing, analyzing, splitting and joining CSV files	R	
 yaml-language-server	YAML Language Server	R	
 yarn	Fast, reliable, and secure dependency management	R	
+yubikey-manager	Python library and command line tool for configuring a YubiKey	R	
 yt-dlp	A youtube-dl fork with additional features and fixes	R	
 ytfzf	A POSIX script to find and watch youtube videos from the terminal	R	
 zathura-cb	Adds comic book support to zathura	R	

bootstrap/packages_testing.tsv

@@ -1,7 +1,6 @@
 Name	Description	Source	Target
 ddrescue	GNU data recovery tool	R	
 go-mtpfs-git	Simple tool for viewing MTP devices as FUSE filesystems	A	
-libfido2	Library functionality for FIDO 2.0, including communication with a device over USB	R	
 most	A terminal pager similar to 'more' and 'less'	R	
 netbird-bin	A WireGuard-based mesh network that connects your devices into a single private network	A	
 odysseyra1n	Bootstraps Procursus and install Sileo/libhooker on devices jailbroken with checkra1n.	A	
@@ -11,6 +10,3 @@ shadow-tech	Desktop client for Shadow Tech cloud gaming service.	A
 signal-desktop	Signal Private Messenger for Linux	R	
 testdisk	Checks and undeletes partitions + PhotoRec, signature based recovery tool	R	
 texlive-latexextra	TeX Live - Large collection of add-on packages for LaTeX	R	
-ttf-iosevka-nerd	Patched font Iosevka from nerd fonts library	R	
-vifm	A file manager with curses interface, which provides Vi[m]-like environment	R	
-yubikey-manager	Python library and command line tool for configuring a YubiKey	R	

bootstrap/system-packages/etc/systemd/sleep.conf.d/suspend-then-hibernate.conf

@@ -0,0 +1,3 @@
+[Sleep]
+HibernateDelaySec=120min
+SuspendEstimationSec=30min

desktop/.config/flavours/config.toml

@@ -0,0 +1,84 @@
+# Configuration for flavours
+# https://github.com/Misterio77/flavours
+#
+# This file should contain a [[items]] section for each application you want themed
+# You can also set a shell (outside items) on which to run hooks
+# Check flavours repository for more information and examples
+
+
+# Explanation and default values for keys:
+
+# # Through which shell command hooks will run. The command will be replaced in '{}'
+shell = "bash -c '{}'"
+#
+# [[items]]
+# # File to inject to, supports tilde and env var expansion. required
+# file = "~/.config/example"
+# # Template to use. required
+# template = "example"
+#
+# # Subtemplate to use
+# subtemplate = "default"
+# # If not rewriting, on which line (usually a comment) to start replacing
+# start = "# Start flavours"
+# # If not rewriting, on which line (usually a comment) to stop replacing
+# end = "# End flavours"
+# # Should we rewrite the entire file, instead of using the above delimiters?
+# rewrite = false
+# # Command to execute after injecting (goes through shell)
+# hook = ""
+# # Whether this hook should be executed when flavours is ran with lightweight flag
+# light = true
+
+[[items]]
+template = "waybar"
+file = "~/.local/state/waybar/colorscheme.css"
+rewrite = true
+light = false
+hook = "killall -SIGUSR2 waybar"
+
+[[items]]
+# Uses custom nvim template to work together with
+# RRethy base16 neovim plugin
+template = "nvim"
+file = "~/.local/state/nvim/colorscheme.lua"
+rewrite = true
+
+[[items]]
+# For newer wezterm versions (missing cursor= field)
+# make use of my custom wezterm template
+template = "wezterm"
+file = "~/.local/state/wezterm/colors.toml"
+rewrite = true
+
+[[items]]
+template = "zathura"
+file = "~/.local/state/zathura/zathurarc"
+rewrite = true
+
+[[items]]
+template = "qutebrowser"
+subtemplate = "minimal"
+file = "~/.local/state/qutebrowser/colorscheme.py"
+rewrite = true
+light = false
+hook = "pgrep -x qutebrowser && qutebrowser :config-source"
+
+# CSS Webpage styling in qutebrowser
+[[item]]
+file = "~/.config/qutebrowser/stylesheets/stylesheet.css"
+template = "styles"
+subtemplate = "css-variables"
+rewrite = false
+start = "/* Start flavours */"
+end = "/* End flavours */"
+
+[[items]]
+# MAKO DOES NOT SUPPORT INCLUDES YET
+template = "mako"
+file = "~/.config/mako/config"
+light = false
+rewrite = false
+start = "# Start flavours"
+end = "# End flavours"
+hook = "killall mako"

desktop/.config/flavours/templates/nvim/templates/default.mustache

@@ -0,0 +1,29 @@
+-- base16-nvim (https://github.com/wincent/base16-nvim)
+-- by Greg Hurrell (https://github.com/wincent)
+-- based on
+-- base16-vim (https://github.com/chriskempson/base16-vim)
+-- by Chris Kempson (https://github.com/chriskempson)
+-- using nvim-base16 neovim plugin
+-- by RRethy (https://github.com/RRethy/nvim-base16)
+-- {{scheme-name}} scheme by {{scheme-author}}
+
+require('base16-colorscheme').setup({
+    base00 = '#{{base00-hex}}',
+    base01 = '#{{base01-hex}}',
+    base02 = '#{{base02-hex}}',
+    base03 = '#{{base03-hex}}',
+    base04 = '#{{base04-hex}}',
+    base05 = '#{{base05-hex}}',
+    base06 = '#{{base06-hex}}',
+    base07 = '#{{base07-hex}}',
+    base08 = '#{{base08-hex}}',
+    base09 = '#{{base09-hex}}',
+    base0A = '#{{base0A-hex}}',
+    base0B = '#{{base0B-hex}}',
+    base0C = '#{{base0C-hex}}',
+    base0D = '#{{base0D-hex}}',
+    base0E = '#{{base0E-hex}}',
+    base0F = '#{{base0F-hex}}'
+})
+
+-- vim: filetype=lua

desktop/.config/flavours/templates/wezterm/templates/default.mustache

@@ -0,0 +1,44 @@
+# Base16 {{scheme-name}} - wezterm color config
+# Scheme by {{scheme-author}}
+
+[colors]
+foreground    = "#{{base05-hex}}"
+background    = "#{{base00-hex}}"
+cursor_bg     = "#{{base05-hex}}"
+cursor_border = "#{{base05-hex}}"
+selection_bg  = "#{{base05-hex}}"
+selection_fg  = "#{{base00-hex}}"
+
+ansi = [
+  "#{{base00-hex}}",
+  "#{{base08-hex}}",
+  "#{{base0B-hex}}",
+  "#{{base0A-hex}}",
+  "#{{base0D-hex}}",
+  "#{{base0E-hex}}",
+  "#{{base0C-hex}}",
+  "#{{base05-hex}}"
+]
+
+brights = [
+  "#{{base03-hex}}",
+  "#{{base08-hex}}",
+  "#{{base0B-hex}}",
+  "#{{base0A-hex}}",
+  "#{{base0D-hex}}",
+  "#{{base0E-hex}}",
+  "#{{base0C-hex}}",
+  "#{{base07-hex}}"
+]
+
+[colors.tab_bar]
+background = "#{{base00-hex}}"
+[colors.tab_bar.inactive_tab]
+bg_color = "#{{base05-hex}}"
+fg_color = "#{{base00-hex}}"
+[colors.tab_bar.active_tab]
+bg_color = "#{{base00-hex}}"
+fg_color = "#{{base05-hex}}"
+[colors.tab_bar.new_tab]
+bg_color = "#{{base05-hex}}"
+fg_color = "#{{base00-hex}}"

desktop/.config/kanshi/config

@@ -1,15 +1,15 @@
 profile docked {
-    output eDP-1 disable
     output "LG Electronics W2442 0x000075FD" position 1920,0
     output "LG Electronics W2442 0x000075E1" position 0,0
-    exec notify-send "💻 Display changed" "Applying docked profile"
+    output eDP-1 disable
+    exec notify-send "💻 Display changed" "Applying docked LG profile"
 }
 
 profile docked {
-    output eDP-1 disable
     output "Goldstar Company Ltd W2442 0x000075FD" position 1920,0
     output "Goldstar Company Ltd W2442 0x000075E1" position 0,0
-    exec notify-send "💻 Display changed" "Applying docked profile"
+    output eDP-1 disable
+    exec notify-send "💻 Display changed" "Applying docked Goldstar profile"
 }
 
 profile portable {

desktop/.config/mako/config

@@ -1,25 +1,18 @@
 sort=-time
 layer=overlay
-background-color=#2e3440
 width=300
 height=110
 border-size=2
-border-color=#88c0d0
 border-radius=15
 max-icon-size=64
 default-timeout=5000
 ignore-timeout=1
 font=monospace 14
 
-[urgency=low]
-border-color=#cccccc
 
-[urgency=normal]
-border-color=#d08770
 
 [urgency=critical]
 #on-notify=exec mpv /usr/share/sounds/freedesktop/stereo/message.oga
-border-color=#bf616a
 default-timeout=0
 
 [mode=do-not-disturb]

desktop/.config/river/init

@@ -71,7 +71,7 @@ riverctl map normal $mod+Shift T spawn "bemenu-translate"
 
 # Desktop theming
 # shellcheck disable=SC2016
-riverctl map normal $mod+Shift S spawn 'styler set $(styler list themes | bemenu)'
+riverctl map normal $mod+Shift S spawn 'flavours list -l | bemenu | xargs flavours apply'
 
 # Password dropdown frontend
 riverctl map normal $mod+Shift P spawn "pass-pick"
@@ -235,16 +235,17 @@ for pad in $(riverctl list-inputs | grep -i touchscreen); do
 done
 
 setxkbmap -option "compose:menu"
+
 # set a nice wallpaper
-if exist wlopm && exist swww; then
+if exist swww; then
     riverctl spawn "swww init"
-    if [ -e "$HOME/pictures/wall.jpg" ]; then
+    outputs=$(swww query | cut -d':' -f1)
+    if [ "$(echo "$outputs" | grep -c -e '^DP')" -eq 2 ] && [ -e "$HOME/pictures/wall_r.jpg" ]; then
+        swww img -o "$(echo "$outputs" | tail -n1)" "$HOME/pictures/wall_l.jpg"
+        swww img -o "$(echo "$outputs" | head -n1)" "$HOME/pictures/wall_r.jpg"
+    elif [ -e "$HOME/pictures/wall.jpg" ]; then
         swww img "$HOME/pictures/wall.jpg"
     fi
-    if wlopm | grep -q DP-5 && wlopm | grep -q DP-3 && [ -e "$HOME/pictures/wall_l.jpg" ] && [ -e "$HOME/pictures/wall_r.jpg" ]; then
-        swww img -o DP-5 "$HOME/pictures/wall_l.jpg"
-        swww img -o DP-3 "$HOME/pictures/wall_r.jpg"
-    fi
 fi
 
 # start status bar
@@ -268,7 +269,6 @@ unset loc
 # start screen idle locking/dimming/sleep tool
 killall swayidle
 riverctl spawn "swayidle \
-    timeout ${time_to_suspend} \"systemctl suspend-then-hibernate\" \
     timeout ${time_to_suspend} \"[ $(cat /sys/class/power_supply/AC/online) -eq 0 ] && systemctl suspend-then-hibernate\"
     timeout ${time_to_screendim} \"wlopm --off '*'\" \
     resume \"wlopm --on '*'\" \

desktop/.config/waybar/style.css

@@ -149,4 +149,4 @@ window#waybar.hidden {
     margin: 0;
     padding: 0;
 }
-@import "/home/marty/.local/share/waybar/colorscheme.css";
+@import "/home/marty/.local/state/waybar/colorscheme.css";

multimedia/.config/beets/config.yaml

@@ -48,8 +48,6 @@ item_fields:
 
 musicbrainz:
   extra_tags: [year, catalognum, country, media, label]
-  user: martyo
-  pass: u^a<7YKULz\#CKX\-Fm]K%Up0
   auto: yes
   remove: yes
 

multimedia/.config/ncmpcpp/bindings

@@ -72,7 +72,7 @@ def_key "P"
   move_selected_items_to
 def_key "f"
   seek_forward
-def_key "b"
+def_key "F"
   seek_backward
 def_key "'"
   jump_to_playing_song

nvim/.config/nvim/after/ftplugin/gitcommit.lua

@@ -0,0 +1,5 @@
+local ns = vim.api.nvim_create_namespace('gitcommit')
+vim.api.nvim_set_hl(ns, 'ColorColumn', { bg = '#a33a3a', blend = 90 })
+vim.api.nvim_win_set_hl_ns(0, ns)
+vim.bo.textwidth = 72
+vim.wo.colorcolumn = '+0'

nvim/.config/nvim/after/ftplugin/quarto.lua

@@ -0,0 +1,94 @@
+-- Start quarto session
+local startsession = function(file, args)
+    file = file or "/tmp/jupyter-magma-session.json"
+    if args then file = args[0] end
+    vim.fn.jobstart({ "jupyter", "console", "-f", file }, {
+        on_stdout = function(_)
+            vim.cmd("MagmaInit " .. file)
+            vim.cmd("JupyterAttach " .. file)
+        end,
+        on_exit = function(_)
+            vim.notify(string.format("jupyter kernel stopped: %s", file), vim.log.levels.INFO)
+        end,
+        stdin = nil
+    })
+end
+vim.api.nvim_create_user_command("JupyterStart", function() startsession() end,
+    {})
+
+local map = vim.keymap.set
+-- filetype mappings
+-- PLUGIN: magma-nvim
+-- Operate jupyter notebooks from within vim
+map('n', '<localleader>cc', ':MagmaEvaluateLine<cr>', { silent = true })
+map('n', '<localleader>C', '?^```{<cr>jV/```<cr>k:<C-u>MagmaEvaluateVisual<cr>',
+    { silent = true, desc = 'Evaluate current code cell' })
+map('x', '<localleader>c', ':<C-u>MagmaEvaluateVisual<cr>', { silent = true })
+map('n', '<localleader>c', "nvim_exec('MagmaEvaluateOperator', v:true)",
+    { expr = true, silent = true, desc = '+code-evaluation' })
+map('n', '<localleader>cr', ':MagmaReevaluateCell<cr>', { silent = true })
+map('n', '<localleader>cu', ':MagmaShowOutput<cr>', { silent = true })
+map('n', '<localleader>cU', ':noautocmd :MagmaEnterOutput<cr>',
+    { silent = true, desc = 'MagmaEnterOutput' })
+map('n', '<localleader>cd', ':MagmaDelete<cr>', { silent = true })
+map('n', '<localleader>cs', ':MagmaInterrupt<cr>')
+map('n', '<localleader>ci', ':MagmaInit ')
+map('n', '<localleader>cD', ':MagmaDeinit<cr>')
+map('n', '<localleader>cR', ':MagmaRestart<cr>')
+
+-- jump to beginning of previous/ next cell code
+map('n', ']c', '/^```{<cr>}:nohl<cr>', { desc = 'Next quarto cell' })
+map('n', '[c', '?^```<cr>n}:nohl<cr>', { desc = 'Previous quarto cell' })
+-- insert cell header above/below
+map('n', '<localleader>co', 'o```{python}<cr><cr>```<esc>k',
+    { desc = 'Insert quarto cell below' })
+map('n', '<localleader>cO', 'O```{python}<cr><cr>```<esc>k',
+    { desc = 'Insert quarto cell above' })
+
+local bufnr = 0
+map('n', '[d', '<cmd>lua vim.diagnostic.goto_prev()<cr>',
+    { buffer = bufnr, desc = 'Previous diagnostic' })
+map('n', ']d', '<cmd>lua vim.diagnostic.goto_next()<cr>',
+    { buffer = bufnr, desc = 'Next diagnostic' })
+map('n', '[e',
+    '<cmd>lua vim.diagnostic.goto_prev({severity = vim.diagnostic.severity.ERROR})<cr>',
+    { buffer = bufnr, desc = 'Previous error' })
+map('n', ']e',
+    '<cmd>lua vim.diagnostic.goto_next({severity = vim.diagnostic.severity.ERROR})<cr>',
+    { buffer = bufnr, desc = 'Next error' })
+
+-- TODO find better way to enable lsp key mappings for quarto buffers
+local prefix = require('which-key').register
+prefix({ ['<localleader>l'] = { name = "+lsp" } })
+map('n', '<localleader>li', '<cmd>LspInfo<cr>',
+    { buffer = bufnr, desc = 'Lsp Info' })
+map('n', '<localleader>ld', '<cmd>lua vim.diagnostic.open_float()<cr>',
+    { buffer = bufnr, desc = 'Line diagnostics' })
+map('n', '<localleader>la', '<cmd>lua vim.lsp.buf.code_action()<cr>',
+    { buffer = bufnr, desc = 'Codeactions' })
+map('n', '<localleader>ln', '<cmd>lua vim.lsp.buf.rename()<cr>',
+    { buffer = bufnr, desc = 'Rename element' })
+map('n', '<localleader>lr', '<cmd>lua vim.lsp.buf.references()<cr>',
+    { buffer = bufnr, desc = 'References' })
+if client and client.server_capabilities.document_formatting then
+    map('n', '<localleader>lf', "<cmd>lua vim.lsp.buf.formatting()<CR>",
+        { buffer = bufnr, desc = 'Format document' })
+end
+
+map('n', 'K', '<cmd>lua vim.lsp.buf.hover()<cr>',
+    { buffer = bufnr, desc = 'Hover definition' })
+map('n', 'gd', '<cmd>lua vim.lsp.buf.definition()<cr>',
+    { buffer = bufnr, desc = 'Definition' })
+map('n', 'gD', '<cmd>lua vim.lsp.buf.declaration()<cr>',
+    { buffer = bufnr, desc = 'Declaration' })
+map('n', 'gs', '<cmd>lua vim.lsp.buf.signature_help()<cr>',
+    { buffer = bufnr, desc = 'Signature help' })
+map('n', 'gI', '<cmd>lua vim.lsp.buf.implementation()<cr>',
+    { buffer = bufnr, desc = 'Implementation' })
+map('n', 'gt', '<cmd>lua vim.lsp.buf.type_definition()<cr>',
+    { buffer = bufnr, desc = 'Type definition' })
+
+if vim.b['sessionfile'] == nil then
+    vim.b['sessionfile'] = vim.fn.tempname() .. '.json'
+    startsession(vim.b['sessionfile'])
+end

nvim/.config/nvim/init.lua

@@ -2,45 +2,14 @@
 -- https://github.com/elianiva/dotfiles/ - with much gratitude
 local api = vim.api
 
--- Highlight whatever is being yanked
-vim.api.nvim_create_autocmd({ "TextYankPost" }, {
-    command = 'silent! lua require"vim.highlight".on_yank{timeout=500}',
-    desc = "Highlight yanked text whenevery yanking something",
-    group = vim.api.nvim_create_augroup('highlightyanks', { clear = true })
-})
-
--- Special setting for editing gopass files - make sure nothing leaks outside the directories it is supposed to
-vim.api.nvim_create_autocmd({ "BufNewFile", "BufRead" }, {
-    pattern = {
-        "/dev/shm/gopass.*", "/dev/shm/pass.?*/?*.txt",
-        "$TMPDIR/pass.?*/?*.txt", "/tmp/pass.?*/?*.txt"
-    },
-    command = 'setlocal noswapfile nobackup noundofile nowritebackup viminfo=',
-    desc = "Don't leak any information when editing potential password files",
-    group = vim.api.nvim_create_augroup('passnoleak', { clear = true })
-})
-
 api.nvim_exec('runtime abbrev.vim', false)
 
--- fixing neovim opening up at same moment as alacritty (see https://github.com/neovim/neovim/issues/11330)
-vim.api.nvim_create_autocmd({ "VimEnter" }, {
-    callback = function()
-        local pid, WINCH = vim.fn.getpid(), vim.loop.constants.SIGWINCH
-        vim.defer_fn(function() vim.loop.kill(pid, WINCH) end, 20)
-    end,
-    desc = "Fix neovim sizing issues if opening same time as alacritty",
-    group = vim.api.nvim_create_augroup('alacritty_fixsize', { clear = true })
-})
-
 local lazypath = vim.fn.stdpath("data") .. "/lazy/lazy.nvim"
 if not vim.loop.fs_stat(lazypath) then
     vim.fn.system({
-        "git",
-        "clone",
-        "--filter=blob:none",
-        "https://github.com/folke/lazy.nvim.git",
-        "--branch=stable", -- latest stable release
-        lazypath,
+        "git", "clone", "--filter=blob:none",
+        "https://github.com/folke/lazy.nvim.git", "--branch=stable", -- latest stable release
+        lazypath
     })
 end
 vim.opt.rtp:prepend(lazypath)
@@ -50,7 +19,11 @@ vim.opt.rtp:prepend(lazypath)
 vim.g.mapleader = " "
 
 require('settings')
-require("lazy").setup("plugins")
+require('autocmds')
+require("lazy").setup("plugins", {
+    defaults = { version = "*" },
+    performance = { rtp = { disabled_plugins = { "netrw", "netrwPlugin" } } }
+})
 require('look')
 require('maps')
 

nvim/.config/nvim/lazy-lock.json

@@ -4,70 +4,71 @@
   "Navigator.nvim": { "branch": "master", "commit": "91d86506ac2a039504d5205d32a1d4bc7aa57072" },
   "bats.vim": { "branch": "master", "commit": "6a5d2ef22b0ede503d867770afd02ebb1f97b709" },
   "cmp-buffer": { "branch": "main", "commit": "3022dbc9166796b644a841a02de8dd1cc1d311fa" },
-  "cmp-cmdline": { "branch": "main", "commit": "23c51b2a3c00f6abc4e922dbd7c3b9aca6992063" },
+  "cmp-cmdline": { "branch": "main", "commit": "8fcc934a52af96120fe26358985c10c035984b53" },
   "cmp-latex-symbols": { "branch": "main", "commit": "165fb66afdbd016eaa1570e41672c4c557b57124" },
   "cmp-nvim-lsp": { "branch": "main", "commit": "0e6b2ed705ddcff9738ec4ea838141654f12eeef" },
   "cmp-nvim-lua": { "branch": "main", "commit": "f3491638d123cfd2c8048aefaf66d246ff250ca6" },
-  "cmp-pandoc.nvim": { "branch": "main", "commit": "cb2980263e14fb3c1b776edbd2c7a312b67c65ae" },
+  "cmp-pandoc-references": { "branch": "master", "commit": "2c808dff631a783ddd2c554c4c6033907589baf6" },
   "cmp-path": { "branch": "main", "commit": "91ff86cd9c29299a64f968ebb45846c485725f23" },
   "cmp-spell": { "branch": "master", "commit": "60584cb75e5e8bba5a0c9e4c3ab0791e0698bffa" },
   "cmp-tmux": { "branch": "main", "commit": "984772716f66d8ee88535a6bf3f94c4b4e1301f5" },
   "cmp-treesitter": { "branch": "master", "commit": "b40178b780d547bcf131c684bc5fd41af17d05f2" },
   "cmp_luasnip": { "branch": "master", "commit": "18095520391186d634a0045dacaa346291096566" },
   "completion-vcard": { "branch": "master", "commit": "2220fd517a985ececed1adcf0e5be8f2815564c7" },
-  "dial.nvim": { "branch": "master", "commit": "5020da900cc5dfd7067f181ee2ebd872ca7c84e8" },
-  "formatter.nvim": { "branch": "master", "commit": "8a4c961330cc4688087f23d18fa7d2f1af9a4902" },
-  "friendly-snippets": { "branch": "main", "commit": "a6f7a1609addb4e57daa6bedc300f77f8d225ab7" },
-  "gitsigns.nvim": { "branch": "main", "commit": "ec4742a7eebf68bec663041d359b95637242b5c3" },
-  "guihua.lua": { "branch": "master", "commit": "d3f6d01639b52e6a83ea98dd6ca244c9aa98b79b" },
-  "lazy.nvim": { "branch": "main", "commit": "273081443471cbc52c327bcb99614c32f247998d" },
+  "dial.nvim": { "branch": "master", "commit": "54b503f906bc9e5ab85288414840a1b86d40769f" },
+  "dressing.nvim": { "branch": "master", "commit": "5f44f829481640be0f96759c965ae22a3bcaf7ce" },
+  "formatter.nvim": { "branch": "master", "commit": "ed949c13e1a942db29ababa35e8c7864ced90eb6" },
+  "friendly-snippets": { "branch": "main", "commit": "009887b76f15d16f69ae1341f86a7862f61cf2a1" },
+  "fwatch.nvim": { "branch": "main", "commit": "a691f7349dc66285cd75a1a698dd28bca45f2bf8" },
+  "gitsigns.nvim": { "branch": "main", "commit": "bb808fc7376ed7bac0fbe8f47b83d4bf01738167" },
+  "jupyter-kernel.nvim": { "branch": "main", "commit": "92eee2a9fcff65aedaba8f0544b87db44981673b" },
+  "lazy.nvim": { "branch": "main", "commit": "14075657131b9a19883a8845c47f1ab65461cd6f" },
   "lightspeed.nvim": { "branch": "main", "commit": "299eefa6a9e2d881f1194587c573dad619fdb96f" },
   "lsp-format.nvim": { "branch": "master", "commit": "ca0df5c8544e51517209ea7b86ecc522c98d4f0a" },
-  "lsp-zero.nvim": { "branch": "main", "commit": "42bc5a1081666098a7154532e6ff5e3edc483b39" },
-  "lsp_signature.nvim": { "branch": "master", "commit": "6f6252f63b0baf0f2224c4caea33819a27f3f550" },
-  "lualine.nvim": { "branch": "master", "commit": "0050b308552e45f7128f399886c86afefc3eb988" },
-  "magma-nvim-goose": { "branch": "main", "commit": "94370733757d550594fe4a1d65643949d7485989" },
-  "markdown-preview.nvim": { "branch": "master", "commit": "02cc3874738bc0f86e4b91f09b8a0ac88aef8e96" },
-  "mason-lspconfig.nvim": { "branch": "main", "commit": "7a97a77eee486ae152d2c559a459eda7c8aa12aa" },
-  "mason.nvim": { "branch": "main", "commit": "14ae1ca58440b158a0a35cf90773013caddf788a" },
-  "mini.nvim": { "branch": "main", "commit": "dc0ccf1b0499d649a6177d2a406babcfe73b97de" },
-  "nabla.nvim": { "branch": "master", "commit": "ddbfc6e244e79db9280c535ee85c81388c5d1b46" },
-  "navigator.lua": { "branch": "master", "commit": "66d84151e94052f710b1dfb0d1fce2faaca6dced" },
-  "neorg": { "branch": "main", "commit": "36cc15300c0dfc19d483b0a4176cb89e94f4730a" },
-  "nui.nvim": { "branch": "main", "commit": "d147222a1300901656f3ebd5b95f91732785a329" },
-  "nvim-base16.lua": { "branch": "master", "commit": "b336f40462b3ca1ad16a17c195b83731a2942d9a" },
-  "nvim-cmp": { "branch": "main", "commit": "cfafe0a1ca8933f7b7968a287d39904156f2c57d" },
+  "lsp-zero.nvim": { "branch": "main", "commit": "79d2091809a295aba94f9ea72cd622bca198d046" },
+  "lsp_signature.nvim": { "branch": "master", "commit": "4665921ff8e30601c7c1328625b3abc1427a6143" },
+  "lualine.nvim": { "branch": "master", "commit": "e99d733e0213ceb8f548ae6551b04ae32e590c80" },
+  "magma-nvim-goose": { "branch": "main", "commit": "d54719dad7771061678a77dace5bef43b4462be8" },
+  "markdown-preview.nvim": { "branch": "master", "commit": "9becceee5740b7db6914da87358a183ad11b2049" },
+  "mason-lspconfig.nvim": { "branch": "main", "commit": "a31e011135a79d63c71254c250c9158e1056a1cb" },
+  "mason.nvim": { "branch": "main", "commit": "3ee3174e30e33c9d58fa07b0a73a6e180474b59c" },
+  "mini.nvim": { "branch": "main", "commit": "427751024313e2270ca723eb16af7b218c83a7fc" },
+  "neural": { "branch": "main", "commit": "155618730b87a67655bdde373ee27bfce8b07ac9" },
+  "nui.nvim": { "branch": "main", "commit": "0dc148c6ec06577fcf06cbab3b7dac96d48ba6be" },
+  "nvim-base16": { "branch": "master", "commit": "0cab02bac9ca02a70db9e1d07e25fdb630b18a21" },
+  "nvim-cmp": { "branch": "main", "commit": "feed47fd1da7a1bad2c7dca456ea19c8a5a9823a" },
   "nvim-colorizer.lua": { "branch": "master", "commit": "36c610a9717cc9ec426a07c8e6bf3b3abcb139d6" },
-  "nvim-lspconfig": { "branch": "master", "commit": "aeb76066212b09c7c01a3abb42fe82f0130ef402" },
+  "nvim-lspconfig": { "branch": "master", "commit": "1a2d5f5224c65b0709bf5da0ccd9cad29272083a" },
+  "nvim-notify": { "branch": "master", "commit": "bdd647f61a05c9b8a57c83b78341a0690e9c29d7" },
   "nvim-surround": { "branch": "main", "commit": "a06dea11e7fdcf338776fa51fa5277163ffb048d" },
-  "nvim-toggleterm.lua": { "branch": "main", "commit": "19aad0f41f47affbba1274f05e3c067e6d718e1e" },
-  "nvim-treesitter": { "branch": "master", "commit": "f6df07be122de665fb363476cc3680c90f5bdf05" },
-  "nvim-treesitter-context": { "branch": "master", "commit": "cacee4828152dd3a83736169ae61bbcd29a3d213" },
-  "nvim-treesitter-textsubjects": { "branch": "master", "commit": "bc047b20768845fd54340eb76272b2cf2f6fa3f3" },
-  "nvim-ts-context-commentstring": { "branch": "main", "commit": "a0f89563ba36b3bacd62cf967b46beb4c2c29e52" },
-  "nvim-ts-rainbow": { "branch": "master", "commit": "ef95c15a935f97c65a80e48e12fe72d49aacf9b9" },
-  "otter.nvim": { "branch": "main", "commit": "e32e432988fddc7fc96f08300e56750a838f0893" },
-  "papis.nvim": { "branch": "main", "commit": "4023d30b336c147b12a249ce103561d03fbedef8" },
-  "playground": { "branch": "master", "commit": "c481c660fa903a0e295902b1765ecfbd6e76a556" },
-  "plenary.nvim": { "branch": "master", "commit": "9a0d3bf7b832818c042aaf30f692b081ddd58bd9" },
+  "nvim-toggleterm.lua": { "branch": "main", "commit": "a5638b2206c3930a16a24e5c184dddd572f8cd34" },
+  "nvim-treesitter": { "branch": "master", "commit": "c38646edf2bdfac157ca619697ecad9ea87fd469" },
+  "nvim-treesitter-context": { "branch": "master", "commit": "895ec44f5c89bc67ba5440aef3d1f2efa3d59a41" },
+  "nvim-treesitter-textsubjects": { "branch": "master", "commit": "b913508f503527ff540f7fe2dcf1bf1d1f259887" },
+  "nvim-ts-context-commentstring": { "branch": "main", "commit": "729d83ecb990dc2b30272833c213cc6d49ed5214" },
+  "nvim-ts-rainbow2": { "branch": "master", "commit": "b2d1f4f51b1bd20de419ffb6f5d0876c4f20d9db" },
+  "otter.nvim": { "branch": "main", "commit": "8b46caf113918c26a9247031d6482709078ec907" },
+  "playground": { "branch": "master", "commit": "4044b53c4d4fcd7a78eae20b8627f78ce7dc6f56" },
+  "plenary.nvim": { "branch": "master", "commit": "253d34830709d690f013daf2853a9d21ad7accab" },
   "popup.nvim": { "branch": "master", "commit": "b7404d35d5d3548a82149238289fa71f7f6de4ac" },
-  "quarto-nvim": { "branch": "main", "commit": "a30db854054973ab8f140adf3e6b565bf2febf0f" },
+  "quarto-nvim": { "branch": "main", "commit": "b44f8772686241e563c7d0f200748fd71766b64e" },
+  "significant.nvim": { "branch": "main", "commit": "5450e9d5917dc6aa9afb0fcbe32355799b8303fb" },
   "spellsitter.nvim": { "branch": "master", "commit": "4af8640d9d706447e78c13150ef7475ea2c16b30" },
-  "sqlite.lua": { "branch": "master", "commit": "93ff5824682ecc874200e338fd8ca9ccd08508f8" },
   "symbols-outline.nvim": { "branch": "master", "commit": "512791925d57a61c545bc303356e8a8f7869763c" },
   "telescope-fzf-native.nvim": { "branch": "main", "commit": "580b6c48651cabb63455e97d7e131ed557b8c7e2" },
-  "telescope.nvim": { "branch": "master", "commit": "203bf5609137600d73e8ed82703d6b0e320a5f36" },
-  "twilight.nvim": { "branch": "main", "commit": "9410252bed96887ca5a86bf16435a3a51a0e6ce5" },
-  "vifm.vim": { "branch": "master", "commit": "199af91d6b1b4997450da2098e7e756627c6583b" },
+  "telescope.nvim": { "branch": "master", "commit": "c1a2af0af69e80e14e6b226d3957a064cd080805" },
+  "twilight.nvim": { "branch": "main", "commit": "8bb7fa7b918baab1ca81b977102ddb54afa63512" },
+  "vifm.vim": { "branch": "master", "commit": "6898b7fcbc36324c127ba42cabe488ab15c785f4" },
   "vim-criticmarkup": { "branch": "master", "commit": "d15dc134eb177a170c79f6377f81eb02a9d20b02" },
-  "vim-easy-align": { "branch": "master", "commit": "12dd6316974f71ce333e360c0260b4e1f81169c3" },
+  "vim-easy-align": { "branch": "master", "commit": "0db4ea6132110631ec678a99a82aa49a0686ae65" },
   "vim-exchange": { "branch": "master", "commit": "784d63083ad7d613aa96f00021cd0dfb126a781a" },
-  "vim-numbertoggle": { "branch": "main", "commit": "075b7478777e694fbac330ee34a74590dad0fee1" },
-  "vim-oscyank": { "branch": "main", "commit": "e6298736a7835bcb365dd45a8e8bfe86d935c1f8" },
-  "vim-pandoc": { "branch": "master", "commit": "9f406d964ca70d959b7867f1b5cee3d4884d4d3c" },
+  "vim-numbertoggle": { "branch": "main", "commit": "df9b1fe616507340718716204ba7f434125bdf7a" },
+  "vim-oscyank": { "branch": "main", "commit": "ffe827a27dae98aa826e2295336c650c9a434da0" },
   "vim-pandoc-syntax": { "branch": "master", "commit": "4268535e1d33117a680a91160d845cd3833dfe28" },
-  "vim-spellsync": { "branch": "master", "commit": "27e103f2d283a1f6e24cc99dbdcd624713aff277" },
-  "which-key.nvim": { "branch": "main", "commit": "684e96c5e8477f1ee9b3f2e9a12d802fd12c5531" },
-  "zen-mode.nvim": { "branch": "main", "commit": "3c92f503823088862ca2a7809d1c7edc90fb92fa" },
-  "zettelkasten.nvim": { "branch": "main", "commit": "0e77624689b470410f5355b613d45219c9350264" }
+  "vim-spellsync": { "branch": "master", "commit": "3d6dd50de9c4d953cc16638112a6ae196df41463" },
+  "which-key.nvim": { "branch": "main", "commit": "2a0c2d80c0a60f041afb1b789cfedbd510e2b2b6" },
+  "wrapping.nvim": { "branch": "master", "commit": "a4013c377e2ffa3be00fb67791d3605ae3115acb" },
+  "zen-mode.nvim": { "branch": "main", "commit": "4bd28fb3a44317c6258cebc7d92243d4b11dfe2c" },
+  "zettelkasten.nvim": { "branch": "main", "commit": "0e77624689b470410f5355b613d45219c9350264" },
+  "zk-nvim": { "branch": "main", "commit": "0413c52500cd0133b0cd8e7e7d43084855ac1760" }
 }

nvim/.config/nvim/lua/autocmds.lua

@@ -0,0 +1,33 @@
+-- Highlight whatever is being yanked
+vim.api.nvim_create_autocmd({ "TextYankPost" }, {
+    command = 'silent! lua require"vim.highlight".on_yank{timeout=500}',
+    desc = "Highlight yanked text whenevery yanking something",
+    group = vim.api.nvim_create_augroup('highlightyanks', { clear = true })
+})
+
+-- Special setting for editing gopass files - make sure nothing leaks outside the directories it is supposed to
+vim.api.nvim_create_autocmd({ "BufNewFile", "BufRead" }, {
+    pattern = {
+        "/dev/shm/gopass.*", "/dev/shm/pass.?*/?*.txt",
+        "$TMPDIR/pass.?*/?*.txt", "/tmp/pass.?*/?*.txt"
+    },
+    command = 'setlocal noswapfile nobackup noundofile nowritebackup viminfo=',
+    desc = "Don't leak any information when editing potential password files",
+    group = vim.api.nvim_create_augroup('passnoleak', { clear = true })
+})
+
+-- fixing neovim opening up at same moment as alacritty (see https://github.com/neovim/neovim/issues/11330)
+vim.api.nvim_create_autocmd({ "VimEnter" }, {
+    callback = function()
+        local pid, WINCH = vim.fn.getpid(), vim.loop.constants.SIGWINCH
+        vim.defer_fn(function() vim.loop.kill(pid, WINCH) end, 20)
+    end,
+    desc = "Fix neovim sizing issues if opening same time as alacritty",
+    group = vim.api.nvim_create_augroup('alacritty_fixsize', { clear = true })
+})
+
+-- remove line numbers from terminal buffers
+vim.api.nvim_create_autocmd({ "TermOpen" }, {
+    pattern = '*',
+    command = 'setlocal nonumber norelativenumber'
+})

nvim/.config/nvim/lua/helpers/augroup.lua

@@ -1,27 +0,0 @@
--- augroup utility function
---
--- Let's you create and use autogroups through lua
--- which (as of now) is not possible through official nvim api
---
--- Cribbed from the very helpful https://icyphox.sh/blog/nvim-lua - Thank you!
---
--- Example usage settings.lua
--- local cmd = vim.cmd
--- local u = require('utils')
--- u.create_augroup({
---     { 'BufRead,BufNewFile', '/tmp/nail-*', 'setlocal', 'ft=mail' },
---     { 'BufRead,BufNewFile', '*s-nail-*', 'setlocal', 'ft=mail' },
--- }, 'ftmail')
--- cmd('au BufNewFile,BufRead * if &ft == "" | set ft=text | endif')
-
-local cmd = vim.cmd
-
-
-return function(cmds, groupname)
-    cmd('augroup ' .. groupname)
-    cmd('autocmd!')
-    for _, autocmd in ipairs(cmds) do
-        cmd('autocmd ' .. table.concat(autocmd, ' '))
-    end
-    cmd('augroup END')
-end

nvim/.config/nvim/lua/look.lua

@@ -1,16 +1,15 @@
-local b = require('base16')
-
--- italic comments if supported
-local set_hl = require("helpers.highlight")
-set_hl("Comment", {gui = "italic"})
-vim.api.nvim_set_var('gruvbox_italic', 1)
-vim.api.nvim_set_var('one_allow_italics', 1)
-vim.api.nvim_set_var('pencil_terminal_italics', 1)
-
-function B16theme(theme)
-    local base16scheme = b.themes[theme]
-    b(base16scheme, true)
+local colorsfile = vim.fn.stdpath('state') .. '/colorscheme.lua'
+local function source_colors()
+    if vim.fn.filereadable(colorsfile) == 1 then
+        vim.cmd("source " .. colorsfile)
+    end
 end
 
--- set the default colorscheme
-B16theme('eighties')
+-- set on startup
+source_colors()
+
+-- continuously watch colors file for changes
+local fwatch = require('fwatch')
+fwatch.watch(colorsfile, {
+    on_event = vim.schedule_wrap(function() source_colors() end)
+})

nvim/.config/nvim/lua/maps.lua

@@ -1,4 +1,5 @@
 local map = vim.keymap.set
+local prefix = require('which-key').register
 
 -- The general ideas behind these mappings:
 --
@@ -50,6 +51,11 @@ map('n', '<Tab>', '%')
 map('i', '<C-u>', '<esc>gUiw`]a')
 map('i', '<C-y>', '<esc>guiw`]a')
 
+-- Add undo break-points at punctuations for plaintext editing
+for _, char in pairs({ ",", ".", ";", "?", "!" }) do
+    map("i", char, string.format("%s<c-g>u", char))
+end
+
 -- yank current filename/filepath to f buffer
 map('n', 'yp', ':let @p = expand("%")<Cr>', { desc = 'yank filename' })
 map('n', 'yP', ':let @p = expand("%:p")<Cr>', { desc = 'yank filepath' })
@@ -114,49 +120,55 @@ map('n', '<leader>e', ':Vifm<cr>', { desc = 'browse files' })
 -- open current file tree with current file directory
 map('n', '<leader>E', ':Vifm getcwd()<cr>', { desc = 'browse project' })
 
+-- set 'v'im-related options
+prefix({ ['<leader>v'] = { name = "+vim" } })
+map('n', '<leader>vc', ':Vifm ' .. vim.fn.stdpath('config') .. '/lua<cr>',
+    { desc = 'open config' })
+map('n', '<leader>vh', ":lua require 'telescope.builtin'.help_tags()<cr>",
+    { desc = 'help tags' })
+map('n', '<leader>vH', ":lua require 'telescope.builtin'.man_pages()<cr>",
+    { desc = 'man pages' })
+map('n', '<leader>vC',
+    ":lua require 'telescope.builtin'.colorscheme(require 'telescope.themes'.get_ivy())<cr>",
+    { desc = 'colorschemes' })
+map('n', '<leader>vl', ":Lazy<cr>", { desc = 'Lazy' })
+map('n', '<leader>vm', ":Mason<cr>", { desc = 'Mason' })
+-- Set vim to distraction free prose mode with F11
+map('n', '<leader>vz', ':ZenMode<cr>', { silent = true })
+
+
 -- PLUGIN: Telescope GLOBAL FUZZY FINDING
 -- buffers and files in current workdir
-map('n', '<leader>s',
+prefix({ ['<leader>f'] = { name = '+find' } })
+map('n', '<leader>fb',
     ":lua require 'telescope.builtin'.buffers(require 'telescope.themes'.get_ivy())<cr>",
     { desc = 'list buffers' })
 -- most recently used / MRU, bound to S since it is essentially a larger
 -- go-back intention than just buffers
-map('n', '<leader>S',
+map('n', '<leader>fo',
     ":lua require 'telescope.builtin'.oldfiles(require 'telescope.themes'.get_ivy())<cr>",
     { desc = 'list old files' })
 -- fuzzy find files in cwd
-map('n', '<leader>f', ":lua require 'telescope.builtin'.find_files()<cr>",
+map('n', '<leader>ff', ":lua require 'telescope.builtin'.find_files()<cr>",
     { desc = 'find files' })
 -- fuzzy find hidden files in cwd
-map('n', '<leader><c-f>',
+map('n', '<leader>fh',
     ":lua require 'telescope.builtin'.find_files({hidden=true})<cr>",
     { desc = 'find hidden files' })
 -- general full-text search in cwd with rg
-map('n', '<leader>F', ":lua require 'telescope.builtin'.live_grep()<cr>",
+map('n', '<leader>fF', ":lua require 'telescope.builtin'.live_grep()<cr>",
     { desc = 'grep search' })
 
 -- git status
-map('n', '<leader>gs', ":lua require 'telescope.builtin'.git_status()<cr>",
+map('n', '<leader>fg', ":lua require 'telescope.builtin'.git_status()<cr>",
     { desc = 'git status' })
 -- git buffercommits
-map('n', '<leader>gb', ":lua require 'telescope.builtin'.git_bcommits()<cr>",
+map('n', '<leader>fc', ":lua require 'telescope.builtin'.git_bcommits()<cr>",
     { desc = 'git buffer commits' })
 -- git commitlog
-map('n', '<leader>gl', ":lua require 'telescope.builtin'.git_commits()<cr>",
+map('n', '<leader>fl', ":lua require 'telescope.builtin'.git_commits()<cr>",
     { desc = 'git commit log' })
 
--- helptags
-map('n', '<leader><F1>', ":lua require 'telescope.builtin'.help_tags()<cr>",
-    { desc = 'help tags' })
--- manpages
-map('n', '<leader><F2>', ":lua require 'telescope.builtin'.man_pages()<cr>",
-    { desc = 'man pages' })
-
--- colorschemes
-map('n', '<leader><F8>',
-    ":lua require 'telescope.builtin'.colorscheme(require 'telescope.themes'.get_ivy())<cr>",
-    { desc = 'colorschemes' })
-
 -- spell suggestions
 map('n', 'z=',
     ":lua require 'telescope.builtin'.spell_suggest(require 'telescope.themes'.get_ivy())<cr>")
@@ -176,12 +188,10 @@ map('n', '<localleader>mp', '<Plug>MarkdownPreviewToggle',
 map('n', '<localleader>f', ':FormatLock<cr>')
 map('n', '<localleader>F', ':FormatWriteLock<cr>')
 
--- Enter distraction free prose mode with F11
-map('n', '<F11>', ':ZenMode<cr>', { silent = true })
-
 -- SPELL CHECKING
 -- Move to the prev/next spelling error with [S ]S
 -- Move to the prev/next spelling error or suggestion with [s ]s
+prefix({ ['<localleader>Z'] = { name = '+Spelling' } })
 map('n', '<localleader>ZZ', ':setlocal spell! spelllang=en_us,de_de<cr>',
     { desc = 'Toggle spellcheck' })
 map('n', '<localleader>ZE', ':setlocal spell! spelllang=en_us<cr>',
@@ -193,7 +203,14 @@ map('i', '<c-s>', '<C-G>u<Esc>[s1z=`]a<C-G>u')
 map('n', '<localleader>s', 'ms[s1z=`s', { desc = 'Fix last spell error' })
 
 -- PLUGIN: mini.nvim
-map('n', '<leader>m', ':lua MiniMap.toggle()<cr>', { silent = true })
+prefix({ ['<leader>s'] = { name = '+show' } })
+map('n', '<leader>sm', ':lua MiniMap.toggle()<cr>',
+    { silent = true, desc = 'toggle minimap' })
+map('n', '<leader>ss', ":lua MiniStarter.open()<cr>", { desc = 'show startpage' })
+
+-- PLUGIN: symbols-outline.nvim
+map('n', '<leader>so', '<cmd>SymbolsOutline<cr>',
+    { silent = true, desc = 'toggle symbol outline' })
 
 -- PLUGIN: easy-align
 -- Start interactive EasyAlign in visual mode (e.g. vipga)
@@ -201,17 +218,6 @@ map('x', 'ga', '<Plug>(EasyAlign)')
 -- Start interactive EasyAlign for a motion/text object (e.g. gaip)
 map('n', 'ga', '<Plug>(EasyAlign)')
 
--- PLUGIN: vnsip
--- jump around in snippets
-map('i', '<Tab>', [[vsnip#jumpable(1) ? '<Plug>(vsnip-jump-next)' : '<Tab>']],
-    { expr = true })
-map('i', '<S-Tab>',
-    [[vsnip#jumpable(-1) ? '<Plug>(vsnip-jump-next)' : '<S-Tab>']],
-    { expr = true })
-
--- PLUGIN: symbols-outline.nvim
-map('n', '<leader>o', '<cmd>SymbolsOutline<cr>', { silent = true })
-
 -- trim trailing whitespaces with mini.nvim trailspace
 map("n", "<localleader>w", function() require("mini.trailspace").trim() end,
     { noremap = true })
@@ -227,35 +233,10 @@ map("v", "g<C-x>", 'g<Plug>(dial-increment)')
 -- PLUGIN: zettelkasten.nvim
 map('n', '<cr>', [[:silent lua require 'zettelkasten'.link_follow()<cr>]])
 map('v', '<cr>', [[:lua require 'zettelkasten'.link_follow(true)<cr>]])
-map('n', '<leader>ww', [[:lua require 'zettelkasten'.index_open()<cr> ]])
+prefix({ ['<leader>w'] = { name = '+wiki' } })
+map('n', '<leader>ww', [[:lua require 'zettelkasten'.index_open()<cr> ]],
+    { desc = "open wiki" })
 
 -- PLUGIN: toggleterm.nvim
 -- create a lazygit window, set up in toggleterm settings
 map('n', '<leader>G', ':Lazygit<cr>')
-
--- PLUGIN: magma-nvim
--- Operate jupyter notebooks from within vim
-map('n', '<localleader>mm', ':MagmaEvaluateLine<cr>', { silent = true })
-map('n', '<localleader>M', '?^```{<cr>jV/```<cr>k:<C-u>MagmaEvaluateVisual<cr>',
-    { silent = true, desc = 'Evaluate current quarto cell' })
-map('x', '<localleader>m', ':<C-u>MagmaEvaluateVisual<cr>', { silent = true })
-map('n', '<localleader>m', "nvim_exec('MagmaEvaluateOperator', v:true)",
-    { expr = true, silent = true })
-map('n', '<localleader>mr', ':MagmaReevaluateCell<cr>', { silent = true })
-map('n', '<localleader>ma', ':MagmaShowOutput<cr>', { silent = true })
-map('n', '<localleader>mq', ':noautocmd :MagmaEnterOutput<cr>',
-    { silent = true, desc = 'MagmaEnterOutput' })
-map('n', '<localleader>md', ':MagmaDelete<cr>', { silent = true })
-map('n', '<localleader>ms', ':MagmaInterrupt<cr>')
-map('n', '<localleader>mI', ':MagmaInit ')
-map('n', '<localleader>mD', ':MagmaDeinit<cr>')
-map('n', '<localleader>mR', ':MagmaRestart<cr>')
-
--- jump to beginning of previous/ next cell code
-map('n', ']c', '/^```{<cr>}:nohl<cr>', { desc = 'Next quarto cell' })
-map('n', '[c', '?^```<cr>n}:nohl<cr>', { desc = 'Previous quarto cell' })
--- insert cell header above/below
-map('n', '<localleader>mo', 'o```{python}<cr><cr>```<esc>k',
-    { desc = 'Insert quarto cell below' })
-map('n', '<localleader>mO', 'O```{python}<cr><cr>```<esc>k',
-    { desc = 'Insert quarto cell above' })

nvim/.config/nvim/lua/plug/_cmp.lua

@@ -1,40 +0,0 @@
-local lsp = require("lsp-zero")
-lsp.preset("recommended")
-lsp.on_attach(function(client, bufnr)
-    require("lsp-format").on_attach(client, bufnr)
-end)
-lsp.nvim_workspace()
-lsp.setup_nvim_cmp({
-    sources = {
-        { name = 'path' }, { name = 'nvim_lsp', keyword_length = 2 },
-        { name = 'buffer',  keyword_length = 3 },
-        { name = 'luasnip', keyword_length = 2 }, { name = 'tmux' },
-        { name = 'otter' }, { name = 'latex_symbols' }, { name = 'vCard' },
-        { name = 'nvim_lua' }, { name = 'buffer' }, { name = 'spell' }
-    },
-    documentation = {
-        max_height = 50,
-        max_width = 90,
-        border = 'rounded',
-        col_offset = 0,
-        side_padding = 1,
-        winhighlight = 'Normal:Normal,FloatBorder:Normal,CursorLine:Visual,Search:None',
-        zindex = 1001
-    }
-})
-lsp.setup()
-vim.diagnostic.config { virtual_text = true }
-
-local cmp = require 'cmp'
--- `/` cmdline setup.
-cmp.setup.cmdline('/', {
-    mapping = cmp.mapping.preset.cmdline(),
-    sources = { { name = 'buffer' } }
-})
--- `:` cmdline setup.
-cmp.setup.cmdline(':', {
-    mapping = cmp.mapping.preset.cmdline(),
-    sources = cmp.config.sources({ { name = 'path' } }, {
-        { name = 'cmdline', option = { ignore_cmds = { 'Man', '!' } } }
-    })
-})

nvim/.config/nvim/lua/plug/_lsp.lua

@@ -1,3 +1,96 @@
--- The arch package defaults to the following directory
-require'navigator'.setup()
-require"lsp_signature".setup()
+local lsp = require("lsp-zero")
+
+vim.diagnostic.config { virtual_text = true }
+
+lsp.preset({
+    name = "recommended",
+    set_lsp_keymaps = false,
+    suggest_lsp_servers = true
+})
+lsp.on_attach(function(client, bufnr)
+    require("lsp-format").on_attach(client, bufnr)
+    local map = vim.keymap.set
+    map('n', '[d', '<cmd>lua vim.diagnostic.goto_prev()<cr>',
+        { buffer = bufnr, desc = 'Previous diagnostic' })
+    map('n', ']d', '<cmd>lua vim.diagnostic.goto_next()<cr>',
+        { buffer = bufnr, desc = 'Next diagnostic' })
+    map('n', '[e',
+        '<cmd>lua vim.diagnostic.goto_prev({severity = vim.diagnostic.severity.ERROR})<cr>',
+        { buffer = bufnr, desc = 'Previous error' })
+    map('n', ']e',
+        '<cmd>lua vim.diagnostic.goto_next({severity = vim.diagnostic.severity.ERROR})<cr>',
+        { buffer = bufnr, desc = 'Next error' })
+
+    local prefix = require('which-key').register
+    prefix({ ['<localleader>l'] = { name = "+lsp" } })
+    map('n', '<localleader>li', '<cmd>LspInfo<cr>',
+        { buffer = bufnr, desc = 'Lsp Info' })
+    map('n', '<localleader>ld', '<cmd>lua vim.diagnostic.open_float()<cr>',
+        { buffer = bufnr, desc = 'Line diagnostics' })
+    map('n', '<localleader>la', '<cmd>lua vim.lsp.buf.code_action()<cr>',
+        { buffer = bufnr, desc = 'Codeactions' })
+    map('n', '<localleader>ln', '<cmd>lua vim.lsp.buf.rename()<cr>',
+        { buffer = bufnr, desc = 'Rename element' })
+    map('n', '<localleader>lr', '<cmd>lua vim.lsp.buf.references()<cr>',
+        { buffer = bufnr, desc = 'References' })
+    if client.server_capabilities.document_formatting then
+        map('n', '<localleader>lf', "<cmd>lua vim.lsp.buf.formatting()<CR>",
+            { buffer = bufnr, desc = 'Format document' })
+    end
+
+    map('n', 'K', '<cmd>lua vim.lsp.buf.hover()<cr>',
+        { buffer = bufnr, desc = 'Hover definition' })
+    map('n', 'gd', '<cmd>lua vim.lsp.buf.definition()<cr>',
+        { buffer = bufnr, desc = 'Definition' })
+    map('n', 'gD', '<cmd>lua vim.lsp.buf.declaration()<cr>',
+        { buffer = bufnr, desc = 'Declaration' })
+    map('n', 'gs', '<cmd>lua vim.lsp.buf.signature_help()<cr>',
+        { buffer = bufnr, desc = 'Signature help' })
+    map('n', 'gI', '<cmd>lua vim.lsp.buf.implementation()<cr>',
+        { buffer = bufnr, desc = 'Implementation' })
+    map('n', 'gt', '<cmd>lua vim.lsp.buf.type_definition()<cr>',
+        { buffer = bufnr, desc = 'Type definition' })
+end)
+lsp.nvim_workspace()
+-- ensure python virtualenv is determined automatically on lsp start
+lsp.configure("pyright", {
+    on_attach = function(client, _)
+        local python_path, msg = require('util.pyenv').get_path(client.config
+        .root_dir)
+        vim.notify(string.format('%s\n%s', msg, python_path))
+        client.config.settings.python.pythonPath = python_path
+    end
+})
+lsp.setup_nvim_cmp({
+    sources = {
+        { name = 'path' }, { name = 'nvim_lsp', keyword_length = 2 },
+        { name = 'pandoc_references' }, { name = 'buffer', keyword_length = 3 },
+        { name = 'luasnip', keyword_length = 2 }, { name = 'tmux' },
+        { name = 'otter' }, { name = 'latex_symbols' }, { name = 'vCard' },
+        { name = 'nvim_lua' }, { name = 'buffer' }, { name = 'spell' }
+    },
+    documentation = {
+        max_height = 50,
+        max_width = 90,
+        border = 'rounded',
+        col_offset = 0,
+        side_padding = 1,
+        winhighlight = 'Normal:Normal,FloatBorder:Normal,CursorLine:Visual,Search:None',
+        zindex = 1001
+    }
+})
+lsp.setup()
+
+local cmp = require 'cmp'
+-- `/` cmdline setup.
+cmp.setup.cmdline('/', {
+    mapping = cmp.mapping.preset.cmdline(),
+    sources = { { name = 'buffer' } }
+})
+-- `:` cmdline setup.
+cmp.setup.cmdline(':', {
+    mapping = cmp.mapping.preset.cmdline(),
+    sources = cmp.config.sources({ { name = 'path' } }, {
+        { name = 'cmdline', option = { ignore_cmds = { 'Man', '!' } } }
+    })
+})

nvim/.config/nvim/lua/plug/_mini.lua

@@ -1,11 +1,17 @@
 require('mini.ai').setup()
-require('mini.comment').setup()
-require('mini.cursorword').setup({delay = 500})
+require('mini.comment').setup({
+    hooks = {
+        pre = function()
+            require('ts_context_commentstring.internal').update_commentstring()
+        end
+    }
+})
+require('mini.cursorword').setup({ delay = 500 })
 require('mini.fuzzy').setup()
 require('mini.indentscope').setup({
     symbol = "│",
-    draw = {animation = require('mini.indentscope').gen_animation('none')},
-    options = {indent_at_cursor = false}
+    draw = { animation = require('mini.indentscope').gen_animation.none() },
+    options = { indent_at_cursor = false }
 })
 require('mini.map').setup()
 -- require('mini.move').setup() -- has not hit stable yet

nvim/.config/nvim/lua/plug/_neorg.lua

@@ -1,8 +0,0 @@
-require("neorg").setup {
-    load = {
-        ["core.defaults"] = {},
-        ["core.norg.concealer"] = {},
-        ["core.norg.completion"] = { config = { engine = "nvim-cmp" } },
-        ["core.norg.qol.toc"] = {}
-    }
-}

nvim/.config/nvim/lua/plug/_treesitter.lua

@@ -1,14 +1,21 @@
-require'nvim-treesitter.configs'.setup {
+local rainbow = require('ts-rainbow')
+require 'nvim-treesitter.configs'.setup {
     -- one of "all", "maintained" (parsers with maintainers), or a list of languages
     ensure_installed = "all",
-    highlight = {enable = true},
-    incremental_selection = {enable = true},
-    textobjects = {enable = true},
-    indent = {enable = true},
+    highlight = { enable = true },
+    incremental_selection = { enable = true },
+    textobjects = { enable = true },
+    indent = { enable = true },
 
     -- enable rainbow brackets, needs p00f/nvim-ts-rainbow
-    rainbow = {enable = true},
+    rainbow = {
+        enable = true,
+        strategy = { rainbow.strategy.global }
+    },
 
     -- for improved commentstrings, needs corresponding plugin
-    context_commentstring = {enable = true}
+    context_commentstring = {
+        enable = true,
+        enable_autocmd = false -- since we run it as a hook from the mini.comment plugin
+    }
 }

nvim/.config/nvim/lua/plugins.lua

@@ -3,7 +3,7 @@ local writing_ft = { "quarto", "pandoc", "markdown", "text", "tex" }
 return {
     -- vim plugs
     -- essential
-    { 'numToStr/Navigator.nvim',           config = true }, -- allow seamless navigation between vim buffers and tmux/wezterm splits
+    { 'numToStr/Navigator.nvim',           branch = "master", config = true }, -- allow seamless navigation between vim buffers and tmux/wezterm splits
     { 'jeffkreeftmeijer/vim-numbertoggle', event = "BufEnter" }, -- toggles numbers to absolute for all buffers but the current which is relative
     { 'ojroques/vim-oscyank',              event = "VeryLazy" }, -- yank from *anywhere* (even ssh session) to clipboard, using :OSCYank
     { 'ggandor/lightspeed.nvim',           event = "VeryLazy" }, -- jump between letters with improved fFtT quicksearch, mimics sneak
@@ -11,9 +11,11 @@ return {
     { 'vifm/vifm.vim' }, -- integrate file manager
     {
         'lewis6991/gitsigns.nvim', -- show vcs changes on left-hand gutter
-        config = true,
+        opts = { numhl = true, signcolumn = false },
         event = "BufRead"
-    }, {
+    },
+    { 'RRethy/nvim-base16', event = "BufWinEnter",
+        dependencies = { 'rktjmp/fwatch.nvim' } }, {
     'norcalli/nvim-colorizer.lua', -- color hex, named colors in the correct preview scheme
     config = true,
     event = "VeryLazy"
@@ -22,7 +24,7 @@ return {
     config = function() require('plug._format') end,
     event = "VeryLazy"
 }, -- editing
-    { 'kylechui/nvim-surround',  version = '*', config = true, event = "VeryLazy" }, -- surround things with other things using ys/cs/ds
+    { 'kylechui/nvim-surround',      version = '*',  config = true, event = "VeryLazy" }, -- surround things with other things using ys/cs/ds
     {
         'monaqa/dial.nvim', -- extend the ^a / ^x possibilities to dates, hex, alphabets, markdown headers
         config = function()
@@ -59,19 +61,21 @@ return {
 }, {
     'junegunn/vim-easy-align', -- Align tables and other alignable things
     event = "VeryLazy"
-}, -- colorschemes
-    { 'norcalli/nvim-base16.lua' }, --
-    -- statusline
+}, -- statusline
     {
         'nvim-lualine/lualine.nvim',
         requires = { 'kyazdani42/nvim-web-devicons', opt = true },
         config = function() require('plug._lualine') end
     }, -- writing
-    { 'vim-pandoc/vim-pandoc-syntax', ft = writing_ft },
-    { 'vim-pandoc/vim-pandoc',        ft = writing_ft },
-    { 'vim-pandoc/vim-criticmarkup',  ft = writing_ft }, {
+    { 'vim-pandoc/vim-criticmarkup', ft = writing_ft }, {
+    'mickael-menu/zk-nvim',
+    config = function() require('zk').setup({ picker = "telescope" }) end
+}, { 'andrewferrier/wrapping.nvim', config = true }, {
     'quarto-dev/quarto-nvim',
-    dependencies = { 'jmbuhr/otter.nvim', 'neovim/nvim-lspconfig' },
+    dependencies = {
+        'jmbuhr/otter.nvim', 'neovim/nvim-lspconfig',
+        'vim-pandoc/vim-pandoc-syntax'
+    },
     config = function()
         require 'quarto'.setup {
             lspFeatures = {
@@ -82,7 +86,19 @@ return {
             }
         }
     end,
-    ft = writing_ft
+    ft = "quarto"
+}, {
+    "lkhphuc/jupyter-kernel.nvim",
+    config = true,
+    cmd = "JupyterAttach",
+    build = ":UpdateRemotePlugins",
+    keys = {
+        {
+            "<localleader>ck",
+            "<Cmd>JupyterInspect<CR>",
+            desc = "Inspect object in kernel"
+        }
+    }
 }, { 'micarmst/vim-spellsync',     event = "VeryLazy" }, -- personal dict improvements for git sync
     { 'folke/zen-mode.nvim',           config = true,     event = "VeryLazy" }, -- provide distraction free writing
     { 'folke/twilight.nvim',           event = "VeryLazy" }, -- provide even distraction free-er writing (lowlight paragraphs)
@@ -110,31 +126,40 @@ return {
         config = function() require('plug._mini') end
     }, {
     "akinsho/nvim-toggleterm.lua", -- simpler, programmable and multiple terminal toggling for nvim
-    config = function() require('plug._toggleterm') end,
-    event = "BufWinEnter"
+    config = function() require('plug._toggleterm') end
 },
     {
         "folke/which-key.nvim",
         config = function() require("which-key").setup {} end
-    }, {
-    "nvim-neorg/neorg",
-    config = function() require("plug._neorg") end,
-    dependencies = { "nvim-lua/plenary.nvim" },
-    version = "*",
-    ft = "norg"
-}, -- extensive organization plugin mimicking orgmode
-    -- fuzzy matching
+    }, -- fuzzy matching
     { "nvim-telescope/telescope-fzf-native.nvim", build = 'make' }, {
     "nvim-telescope/telescope.nvim",
     dependencies = { "nvim-lua/popup.nvim", "nvim-lua/plenary.nvim" },
     config = function() require('plug._telescope') end
+}, {
+    "dense-analysis/neural",
+    dependencies = { "MunifTanjim/nui.nvim", "elpiloto/significant.nvim" },
+    config = function()
+        require('neural').setup({
+            source = { openai = { api_key = vim.env.OPENAI_API_KEY } }
+        })
+    end
 }, -- treesitter
     {
         'nvim-treesitter/nvim-treesitter',
         build = ':TSUpdate',
-        config = function() require('plug._treesitter') end
-    }, { 'nvim-treesitter/playground',        cmd = "TSPlaygroundToggle" }, -- interactively view and query the treesitter tree
-    { 'romgrk/nvim-treesitter-context',           event = "BufReadPre",      config = true }, -- show current cursor context at top of buffer
+        config = function() require('plug._treesitter') end,
+        event = "BufReadPre",
+        -- rainbow brackets using treesitter
+        -- show current cursor context at top of buffer
+        -- improves commenting plugin above by using ts
+        dependencies = {
+            'https://gitlab.com/HiPhish/nvim-ts-rainbow2.git',
+            { 'romgrk/nvim-treesitter-context', config = true },
+            'JoosepAlviste/nvim-ts-context-commentstring'
+        }
+    },
+    { 'nvim-treesitter/playground',               cmd = "TSPlaygroundToggle" }, -- interactively view and query the treesitter tree
     {
         'RRethy/nvim-treesitter-textsubjects', -- allows using . and ; to target treesitter branches
         config = function()
@@ -149,47 +174,54 @@ return {
             }
         end,
         event = "BufReadPre"
-    }, { 'p00f/nvim-ts-rainbow',                 event = "BufReadPre" }, -- rainbow brackets using treesitter
-    { 'JoosepAlviste/nvim-ts-context-commentstring', event = "BufReadPre" }, -- improves commenting plugin above by using ts
-    {
-        'lewis6991/spellsitter.nvim', -- uses treesitter to highlight spelling errors
-        config = function() require('spellsitter').setup() end,
-        event = "BufReadPre"
-    }, -- lsp
+    }, {
+    'lewis6991/spellsitter.nvim', -- uses treesitter to highlight spelling errors
+    config = function() require('spellsitter').setup() end,
+    event = "BufReadPre"
+}, -- lsp
     {
         "VonHeikemen/lsp-zero.nvim",
         dependencies = {
-            "neovim/nvim-lspconfig", "williamboman/mason.nvim",
-            "williamboman/mason-lspconfig.nvim", "hrsh7th/nvim-cmp",
-            "hrsh7th/cmp-buffer", "hrsh7th/cmp-path",
-            "saadparwaiz1/cmp_luasnip", "hrsh7th/cmp-nvim-lsp",
-            "hrsh7th/cmp-nvim-lua", "L3MON4D3/LuaSnip",
-            "rafamadriz/friendly-snippets", "andersevenrud/cmp-tmux",
-            "hrsh7th/cmp-nvim-lsp", "kdheepak/cmp-latex-symbols",
-            "ray-x/cmp-treesitter", "f3fora/cmp-spell", "hrsh7th/cmp-cmdline",
-            "cbarrete/completion-vcard", {
-            'aspeddro/cmp-pandoc.nvim',
-            dependencies = { 'nvim-lua/plenary.nvim', 'jbyuki/nabla.nvim' },
-            event = "InsertEnter"
-        }, { "lukas-reineke/lsp-format.nvim", config = true }
+            { "neovim/nvim-lspconfig",         branch = "master" },
+            "williamboman/mason.nvim", "williamboman/mason-lspconfig.nvim", {
+            "hrsh7th/nvim-cmp",
+            branch = "main",
+            dependencies = {
+                "hrsh7th/cmp-buffer", "hrsh7th/cmp-path",
+                "saadparwaiz1/cmp_luasnip", "hrsh7th/cmp-nvim-lsp",
+                "hrsh7th/cmp-nvim-lua", "andersevenrud/cmp-tmux",
+                "hrsh7th/cmp-nvim-lsp", "kdheepak/cmp-latex-symbols",
+                "ray-x/cmp-treesitter", "f3fora/cmp-spell",
+                "hrsh7th/cmp-cmdline", "cbarrete/completion-vcard",
+                "jc-doyle/cmp-pandoc-references",
+            }
+        }, "L3MON4D3/LuaSnip", "rafamadriz/friendly-snippets",
+            { "lukas-reineke/lsp-format.nvim", config = true }
         },
-        config = function() require('plug._cmp') end
-    }, { 'simrat39/symbols-outline.nvim', config = true,         event = "VeryLazy" }, -- vista-like outline view for code
-    { 'ray-x/lsp_signature.nvim',      event = "VeryLazy" },
-    { 'ray-x/guihua.lua',              build = 'cd lua/fzy && make', event = "VeryLazy" }, {
-    'ray-x/navigator.lua',
-    config = function() require('plug._lsp') end,
-    event = "VeryLazy"
-}, -- and completion
-    {
-        "jghauser/papis.nvim",
-        after = { "telescope.nvim", "nvim-cmp" },
-        dependencies = {
-            "kkharji/sqlite.lua", "nvim-lua/plenary.nvim",
-            "MunifTanjim/nui.nvim", "nvim-treesitter/nvim-treesitter"
-        },
-        ft = writing_ft,
-        rocks = { "lyaml" },
-        config = true
-    }
+        config = function() require('plug._lsp') end
+    }, { 'simrat39/symbols-outline.nvim', config = true, event = "VeryLazy" }, -- vista-like outline view for code
+    { 'ray-x/lsp_signature.nvim',      config = true }, -- UI improvements
+    { 'stevearc/dressing.nvim',        config = true }, {
+    'rcarriga/nvim-notify',
+    config = function() vim.notify = require("notify") end
+}
+    -- { -- REQUIRES custom `yay -S --asdeps lua51-lyaml invocation` AND is suuper slow
+    --     "jghauser/papis.nvim",
+    --     after = { "telescope.nvim", "nvim-cmp" },
+    --     dependencies = {
+    --         "kkharji/sqlite.lua", "nvim-lua/plenary.nvim",
+    --         "MunifTanjim/nui.nvim", "nvim-treesitter/nvim-treesitter"
+    --     },
+    --     ft = writing_ft,
+    --     rocks = { "lyaml" },
+    --     config = function()
+    --         require('papis').setup({
+    --             papis_python = {
+    --                 dir = "/home/marty/documents/library/academia",
+    --                 info_name = "info.yaml",
+    --                 notes_name = [[notes.qmd]]
+    --             }
+    --         })
+    --     end
+    -- }
 }

nvim/.config/nvim/lua/settings.lua

@@ -1,4 +1,4 @@
-local default_builtins_disabled = {"netrw", "netrwPlugin"}
+local default_builtins_disabled = { "netrw", "netrwPlugin" }
 local disable_builtins = function(builtins)
     for _, plugin in pairs(builtins) do vim.g["loaded_" .. plugin] = 1 end
 end
@@ -12,23 +12,19 @@ local o = {
     shiftwidth = 4,
     softtabstop = 4,
     expandtab = true,
-
     -- make jumplist behave more like browser, when jumping back
     -- and then adding a new jump discards all the previous
     -- 'future-jump' tree, making more sense for wiki-like movement
     jumpoptions = 'stack',
-
     -- set cursor line highlighting, esp useful when using with bracket
     -- highlighting and you don't know which side of the brace the cursor is on
     cursorline = true,
-
     -- shows linenumbers relative to the one you are on, for easy movement and
     -- dNUMBERd deletions
     number = true,
     relativenumber = true,
     -- puts the numbers into the signcolumn so when git/lsp show signs there's no jump
     signcolumn = 'number',
-
     -- keeps an undofile next to files so that you can even undo if vim is closed
     -- in between
     undofile = true,
@@ -38,32 +34,30 @@ local o = {
     -- all lowercased
     ignorecase = true,
     smartcase = true,
-
     -- shows previews of what substitute command will do (and a couple others)
     inccommand = 'split',
-
     -- disables showing us the current mode in the command line since airline takes
     -- care of it
     showmode = false,
     -- turn off modeline, to ensure security observation
     modeline = false,
-
     -- i feel foldlevel 2 is generally pretty usable, for headlines and similar
+    -- set to use treesitter in treesitter config
     foldlevel = 2,
     conceallevel = 2,
-
     -- enable mouse, doesn't bug me and might come in useful at some point
     mouse = 'a',
-
     -- pump all clippings into the system clipboard
     clipboard = 'unnamedplus',
-
     --  turn of automatic resizing of individual splits
     equalalways = false,
-
     --  make sure there's always *some* context below cursor
-    scrolloff = 4
-
+    scrolloff = 4,
+    -- open new buffers bottomright
+    splitright = true,
+    splitbelow = true,
+    -- remove command line if no command is currently present
+    cmdheight = 0,
 }
 
 for k, v in pairs(o) do

nvim/.config/nvim/lua/util/pyenv.lua

@@ -0,0 +1,45 @@
+local util = require('lspconfig/util')
+local path = util.path
+local T = {}
+local exepath = vim.fn.exepath
+
+local path_sep = function()
+    local is_win = vim.loop.os_uname().sysname:find('Windows')
+    if is_win then
+        return '\\'
+    else
+        return '/'
+    end
+end
+
+-- from https://github.com/ray-x/navigator.lua/issues/247#issue-1465308677
+T.get_path = function(workspace)
+    -- Use activated virtualenv.
+    if vim.env.VIRTUAL_ENV then
+        return path.join(vim.env.VIRTUAL_ENV, 'bin', 'python'), 'virtual env'
+    end
+
+    -- Find and use virtualenv in workspace directory.
+    for _, pattern in ipairs({ '*', '.*' }) do
+        local match = vim.fn.glob(path.join(workspace, pattern, 'pyvenv.cfg'))
+        local sep = path_sep()
+        local py = 'bin' .. sep .. 'python'
+        if match ~= '' then
+            match = string.gsub(match, 'pyvenv.cfg', py)
+            return match, string.format('venv base folder: %s', match)
+        end
+        match = vim.fn.glob(path.join(workspace, pattern, 'poetry.lock'))
+        if match ~= '' then
+            local venv_base_folder = vim.fn.trim(vim.fn.system(
+                'poetry env info -p'))
+            return path.join(venv_base_folder, 'bin', 'python'),
+                string.format('venv base folder: %s', venv_base_folder)
+        end
+    end
+
+    -- Fallback to system Python.
+    return exepath('python3') or exepath('python') or 'python',
+        'fallback to system python path'
+end
+
+return T

nvim/.config/nvim/plugin/notational-fzf.vim

@@ -1,8 +0,0 @@
-" PLUGIN: notational-fzf-vim
-" Configure notational-fzf-vim
-if $WIKIROOT ==? ""
-  let g:nv_search_paths = [ expand('~/documents/notes') ]
-else
-  let g:nv_search_paths = [ $WIKIROOT ]
-endif
-let g:nv_wrap_preview_text=1

nvim/.config/nvim/plugin/vim-pandoc.vim

@@ -1,34 +0,0 @@
-" PLUGIN: vim-pandoc
-" handle markdown files with pandoc (and pandoc syntax!)
-let g:pandoc#modules#disabled = [ "keyboard", "folding" ]
-let g:pandoc#filetypes#pandoc_markdown = 0
-let g:pandoc#filetypes#handled = [ "extra", "latex", "markdown", "pandoc", "rst", "textile"]
-" disable all default keymaps
-let g:pandoc#keyboard#use_default_mappings=0
-" needs to be set for wrapping and unwrapping of lines to work when doing j/k
-" or gj/gk respectively, to allow precise relative cursor jumping
-let g:pandoc#keyboard#display_motions=0
-let g:pandoc#hypertext#use_default_mappings=0
-" if there's a pdf and an html or similar, open the pdf
-let g:pandoc#command#prefer_pdf=1
-" look for bibtex files w/ same name as edited one, then .bib in current dir, yaml frontmatter, and finally the globally set bibs file
-let g:pandoc#biblio#sources="bcyg"
-" the globally set bibs file
-if $BIBFILE ==? ""
-  let g:pandoc#biblio#bibs=[expand("~/documents/library/academia/academia.bib")]
-else
-  let g:pandoc#biblio#bibs=[expand($BIBFILE)]
-endif
-let g:pandoc#biblio#use_bibtool=1
-let g:pandoc#biblio#use_preview=1
-let g:pandoc#completion#bib#mode='citeproc'
-let g:pandoc#folding#fold_yaml=1
-let g:pandoc#folding#fastfolds=1
-" let g:pandoc#folding#level=1
-let g:pandoc#spell#default_langs=["en_us", "de_de"]
-let g:pandoc#hypertext#ausosave_on_edit_open_link=1
-let g:pandoc#hypertext#create_if_no_alternates_exists=1
-
-" PLUGIN: vim-pandoc-syntax
-let g:pandoc#syntax#conceal#use = 1
-let g:pandoc#syntax#conceal#urls = 1

office/.config/imapfilter/accounts.lua

@@ -1,9 +1,9 @@
 local accounts = {}
 
-local status, gmailuser = pipe_from(
-                              'gpg2 --decrypt --no-tty --quiet --no-verbose --for-your-eyes-only --pinentry-mode ask ~/.local/share/pass/misc/aerc-gmail-app-password.gpg | grep username | cut -d: -f2')
-local status, gmailpass = pipe_from(
-                              'gpg2 --decrypt --no-tty --quiet --no-verbose --for-your-eyes-only --pinentry-mode ask ~/.local/share/pass/misc/aerc-gmail-app-password.gpg | head -n1')
+local _, gmailuser = pipe_from(
+    'pass show misc/gmail-app-password | grep username | cut -d: -f2')
+local _, gmailpass = pipe_from(
+    'pass show misc/gmail-app-password | head -n1')
 -- Setup an imap account called gmail
 accounts.gmail = IMAP {
     server = "imap.gmail.com",

office/.config/imapfilter/filters/rollup-dump.lua

@@ -30,11 +30,11 @@ function getSenderList(rollupfile)
         for line in file:lines() do table.insert(rollupSenders, line) end
     else
         print(
-            "ERROR: rollup did not find rollup.txt file containing mail addresses at " ..
-                rollupfile or "")
+            "rollup did not find rollup.txt file containing mail addresses at " ..
+            rollupfile or ". Skipping.")
     end
     return rollupSenders
 end
 
 sendToFolder(accounts.gmail["Inbox"], accounts.gmail["Dump"],
-             getSenderList(getRollupFile()))
+    getSenderList(getRollupFile()))

office/.config/sh/alias.d/taskwarrior.sh

@@ -25,6 +25,7 @@ alias tan="task annotate"
 
 alias tn="task next +READY"
 alias tun="task next urgency \> 4"
+alias tod="task +TODAY or +OVERDUE"
 
 if exist timew; then
     alias tra="task active && timew"

office/.config/task/taskrc

@@ -80,7 +80,7 @@ include task-sync.rc
 include contexts
 
 # try to fix some color weirdness, especially in tmux
-# color.scheduled=on grey
+color.scheduled=on grey
 
 # only ever show one result in the tasksh
 tasksh.autoclear=1

office/.local/bin/sync-mail

@@ -47,6 +47,7 @@ prehook() {
         eval "$MBSYNC_PRE"
         return 0
     fi
+    checkwarnuser
     imapfilter -c "${XDG_CONFIG_HOME:-$HOME/.config}/imapfilter/config.lua"
 }
 
@@ -142,7 +143,6 @@ elif [ -n "$1" ]; then
 fi
 
 main() {
-    checkwarnuser
     enablegpgagent
     prehook
 

qutebrowser/.config/qutebrowser/config.py

@@ -72,4 +72,7 @@ c.hints.selectors["code"] = [
 ]
 
 # give the browser nice theme colors
-config.source("colorscheme.py")
+state_dir=os.environ.get('XDG_STATE_HOME', f"{os.environ['HOME']}/.local/state")
+colorscheme=f"{state_dir}/qutebrowser/colorscheme.py"
+if os.path.isfile(colorscheme):
+    config.source(colorscheme)

qutebrowser/.config/qutebrowser/redirects.py

@@ -7,7 +7,6 @@ redirects = {
         "source": ["youtube.com"],
         "target": [
             "yt.oelrichsgarcia.de",
-            "vid.priv.au",
             "invidious.weblibre.org",
             "invidious.dhusch.de",
             "iv.ggtyler.dev",
@@ -197,7 +196,7 @@ def rewrite(request: interceptor.Request):
                 matched=True
 
         if matched:
-            target = service["target"][random.randint(0, len(service["target"]))]
+            target = service["target"][random.randint(0, len(service["target"])-1)]
             if target is not None and url.setHost(target) is not False:
                 try:
                     request.redirect(url)

sh/.config/sh/xdg

@@ -25,7 +25,8 @@ test "$XDG_DESKTOP_DIR" || export XDG_DESKTOP_DIR="$HOME/desktop"
 test "$XDG_DOCUMENTS_DIR" || export XDG_DOCUMENTS_DIR="$HOME/documents"
 test "$XDG_DOWNLOAD_DIR" || export XDG_DOWNLOAD_DIR="$HOME/downloads"
 
-export XDG_MUSIC_DIR="$HOME/media/audio/music"
+export XDG_MEDIA_DIR="$HOME/media"
+export XDG_MUSIC_DIR="$XDG_MEDIA_DIR/audio/music"
 export XDG_PICTURES_DIR="$HOME/pictures"
 export XDG_VIDEOS_DIR="$HOME/videos"
 
@@ -49,6 +50,11 @@ xdg_makeForUser() {
     chmod 0700 "$1"
 }
 
+if [ -h "$XDG_MEDIA_DIR" ] && [ ! -e "$XDG_MEDIA_DIR" ]; then
+    rm "$XDG_MEDIA_DIR"
+    xdg_makeForUser "$XDG_MEDIA_DIR"
+fi
+
 ## ensure directories exist
 xdg_isThere "$XDG_BIN_HOME" || xdg_makeForUser "$XDG_BIN_HOME"
 xdg_isThere "$XDG_CACHE_HOME" || xdg_makeForUser "$XDG_CACHE_HOME"

terminal/.config/vifm/vifmrc

@@ -469,7 +469,8 @@ filextype *.csv
         \ {Open with visidata}
         \ vd %f,
 fileviewer *.csv
-        \ xsv sample 100 %c | xsv table -c8 -p1 -w1,
+        \ tidy-viewer
+        " \ xsv sample 100 %c | xsv table -c8 -p1 -w1,
         " \ {cat %c | sed -e 's/,,/, ,/g' | column -s, -t | less -#5 -N -S; }
 
 " Mindmap

terminal/.config/wezterm/wezterm.lua

@@ -1,78 +1,47 @@
 local wezterm = require 'wezterm'
-local mux = wezterm.mux
 
 local maps = require 'maps'
 
 require 'statusbar'.setup()
 require 'events'.setup()
 
--- wezterm.on("set-up-dotfile-workspace", function(window, pane)
---     -- Set a workspace for coding on a current project
---     -- Top pane is for the editor, bottom pane is for the build tool
---     local project_dir = wezterm.home_dir .. '/projects/test/quarto/quarto-test'
---     local tab, build_pane, window = mux.spawn_window {
---         workspace = 'coding',
---         cwd = project_dir,
---         args = args
---     }
---     local editor_pane = build_pane:split{
---         direction = 'Top',
---         size = 0.6,
---         cwd = project_dir
---     }
---     build_pane:send_text 'quarto check'
---     mux.set_active_workspace 'coding'
--- end)
---
--- wezterm.on('gui-startup', function(cmd)
---     -- allow `wezterm start -- something` to affect what we spawn
---     -- in our initial window
---     local args = {}
---     if cmd then args = cmd.args end
---
---     -- Set a workspace for coding on a current project
---     -- Top pane is for the editor, bottom pane is for the build tool
---     local project_dir = wezterm.home_dir .. '/projects/test/quarto/quarto-test'
---     local tab, build_pane, window = mux.spawn_window {
---         workspace = 'coding',
---         cwd = project_dir,
---         args = args
---     }
---     local editor_pane = build_pane:split {
---         direction = 'Top',
---         size = 0.6,
---         cwd = project_dir
---     }
---     build_pane:send_text 'quarto check'
---
---     -- A workspace for interacting with a local machine that
---     -- runs some docker containners for home automation
---     local tab, pane, window = mux.spawn_window {
---         workspace = 'toppy',
---         args = { 'top' }
---     }
---
---     -- We want to startup in the coding workspace
---     mux.set_active_workspace 'coding'
--- end)
+local function file_exists(name)
+    local f = io.open(name, "r")
+    if f ~= nil then
+        io.close(f)
+        return true
+    else
+        return false
+    end
+end
+
+-- automatically reload colors file
+local colorsfile = (os.getenv('XDG_STATE_HOME') or
+    (os.getenv('HOME') .. '/.local/state')) ..
+    '/wezterm/colors.toml'
+local colors = {}
+if file_exists(colorsfile) == true then
+    wezterm.add_to_config_reload_watch_list(colorsfile)
+    colors = wezterm.color.load_scheme(colorsfile)
+end
 
 return {
     enable_wayland = true,
-
     hide_tab_bar_if_only_one_tab = true,
     use_fancy_tab_bar = false,
     tab_bar_at_bottom = true,
     window_padding = { left = 0, right = 0, top = 0, bottom = 0 },
-
-    color_scheme = "Railscasts (base16)",
-
+    colors = colors,
+    color_scheme = "Nord (base16)", -- will be overwritten by colors
     -- default_prog = {"nu"},
     scrollback_lines = 10000,
-
     font = wezterm.font('Iosevka Nerd Font'),
     line_height = 1.0,
-
     leader = { key = 'a', mods = 'CTRL', timeout_milliseconds = 1500 },
     keys = maps.keys,
-    key_tables = maps.key_tables
+    key_tables = maps.key_tables,
+    inactive_pane_hsb = {
+        saturation = 0.9,
+        brightness = 0.9,
+    }
 }

writing/.config/papis/config

@@ -3,11 +3,11 @@
 #picktool = fzf
 default-library = master
 file-browser = vifm
-ref-format = {doc[author_list][0][surname]}{doc[year]}
+ref-format = {doc[author_list][0][family]}{doc[year]}
 
 # edit info.yaml as new papers are added
 add-edit = True
-add-folder-name = {doc[ref]}-{doc[title]}
+add-folder-name = {doc[author_list][0][family]}-{doc[title]}
 add-file-name = {doc[author_list][0][family]}{doc[year]}
 header-format-file = ~/.config/papis/headerformat
 extra-bibtex-keys = ["tags", "readstatus"]
@@ -31,5 +31,8 @@ dir = ~/documents/library
 [academia]
 dir = ~/documents/library/academia
 
+[personal]
+dir = ~/documents/library/personal
+
 [cs]
 dir = ~/documents/library/cs

writing/.config/sh/alias.d/zk.sh

@@ -0,0 +1,10 @@
+#!/usr/bin/env sh
+#
+
+n() {
+    if [ $# -eq 0 ]; then
+        zk edit -i
+    else
+        zk "${@}"
+    fi
+}

writing/.config/sh/env.d/zk.sh

@@ -0,0 +1,4 @@
+#!/usr/bin/env sh
+#
+
+export ZK_NOTEBOOK_DIR="${WIKIROOT:-~/documents/notes/}/pinky"

writing/.config/zathura/zathurarc

@@ -1,4 +1,6 @@
+# overwritten by below colors
 include colorscheme
+include /home/marty/.local/state/zathura/zathurarc
 
 set recolor                     "true"
 set selection-clipboard         "clipboard"
@@ -7,4 +9,3 @@ set first-page-column 1
 map r reload
 map R rotate
 map p print
-