.githooks/prepare-commit-msg

@@ -5,7 +5,7 @@ COMMIT_SOURCE="$2"
 
 BOOTSTRAPDIR="bootstrap"
 pkg_committed="$(cat "$(git rev-parse --show-toplevel)"/$BOOTSTRAPDIR/packages*.tsv | grep -v -e '^Name	Description	Source	Target' | cut -f1 | sort)"
-pkg_onsystem=$(pacman -Qqett | sort)
+pkg_onsystem=$(pacman -Qqett | grep -v "$(pacman -Qqg base-devel)" | sort)
 
 # get files only in repo, and only on machine
 only_committed=$(comm -23 <(echo "$pkg_committed") <(echo "$pkg_onsystem"))

bootstrap/install_packages.sh

@@ -7,10 +7,9 @@
 # DESCRIPTION:  Display usage information for this script.
 # PARAMETERS:   see usage function
 #==============================================================================
-PKG_TSV_FILE=${PKG_TSV_FILE:-bootstrap/packages_stable.tsv}
+PKG_TSV_FILE=${PKG_TSV_FILE:-bootstrap/packages.tsv}
-packages_repo="${BOOTSTRAP_PACKAGES:-$(grep -e '	R	' "$PKG_TSV_FILE" | cut -f1 -d'	')}"
+packages_repo="${BOOTSTRAP_PACKAGES:-$(grep -e '	R	' "$PKG_TSV_FILE" | cut -f1 -d'	' )}"
-packages_aur="${BOOTSTRAP_PACKAGES_AUR:-$(grep -e '	A	' "$PKG_TSV_FILE" | cut -f1 -d'	')}"
+packages_aur="${BOOTSTRAP_PACKAGES_AUR:-$(grep -e '	A	' "$PKG_TSV_FILE" | cut -f1 -d'	' )}"
-packages_pipx="${BOOTSTRAP_PACKAGES_PIPX:-$(grep -e '	P	' "$PKG_TSV_FILE" | cut -f1,5 -d'	')}"
 
 main() {
     local cmd=""
@@ -37,16 +36,16 @@ main() {
     exit $ret
 }
 
-install_paru() {
+install_yay() {
-    # check for existing paru installation
+    # check for existing yay installation
-    if type paru >/dev/null 2>&1; then
+    if type yay >/dev/null 2>&1; then
-        echo "Existing paru installation found ..........................................."
+        echo "Existing yay installation found ..........................................."
         return
     fi
 
-    # use tmp dir to make paru
+    # use tmp dir to make yay
     target=$(mktemp -d)
-    git clone https://aur.archlinux.org/paru.git "$target"
+    git clone https://aur.archlinux.org/yay.git "$target"
     cd "$target" || exit
     makepkg -si
 }
@@ -54,61 +53,31 @@ install_paru() {
 update_repos() {
     unattended="$1"
     if "$unattended"; then
-        paru -Sqyy --noconfirm
+        yay -Sqyy --noconfirm
     else
-        paru -Syy
+        yay -Syy
     fi
 }
 
 install_packages() {
     unattended="$1"
     if "$unattended"; then
-        echo "$packages_repo" "$packages_aur" | paru -Squ --noconfirm --needed -
+        echo "$packages_repo" "$packages_aur" | yay -Squ --noconfirm --needed -
     else
-        echo "$packages_repo" | paru -Squ --needed -
+        echo "$packages_repo" | yay -Squ --needed -
-        echo "$packages_aur" | paru -S --needed -
+        echo "$packages_aur" | yay -S --needed -
     fi
 }
 
-install_pipx() {
-    if type pipx >/dev/null 2>&1; then
-        echo "Existing pipx installation found .........................................."
-        return
-    fi
-    if "$unattended"; then
-        paru -S --noconfirm python-pipx
-    else
-        paru -S python-pipx
-    fi
-}
-
-install_pipx_pkgs() {
-    while IFS= read -r line; do
-        if [ -z "$line" ]; then return; fi
-        prog=$(echo "$line" | cut -f1 -d'	')
-        pipx install "$prog"
-
-        injections=$(echo "$line" | cut -f2 -d'	')
-        for inject_args in ${injections//,/ }; do
-            pipx inject "$prog" "$inject_args"
-        done
-    done <<<"$packages_pipx"
-}
-
 install() {
     unattended=$1
     echo "Beginning package bootstrap ..............................................."
-    echo "Installing paru ............................................................"
+    echo "Installing yay ............................................................"
-    install_paru
+    install_yay
     echo "Installing apps ..........................................................."
     update_repos "$unattended"
     install_packages "$unattended"
     echo "Done ......................................................................"
-    echo "Installing pipx ..........................................................."
-    install_pipx
-    echo "Installing pipx packages .................................................."
-    install_pipx_pkgs
-    echo "Done ......................................................................"
 }
 
 main "$@"

bootstrap/packages_stable.tsv

@@ -25,9 +25,7 @@ bash-completion	Programmable completion for the bash shell	R
 bash-language-server	Bash language server implementation based on Tree Sitter and its grammar for Bash	R	
 bat	Cat clone with syntax highlighting and git integration	R	
 bc	An arbitrary precision calculator language	R	
-beancount	A personal double entry accounting and budgeting software	P		beancount-categorizer,beancount-dkb,fava,python-magic,smart-importer
 bearssl	Implementation of the SSL/TLS protocol (RFC 5246) written in C	R	
-beets	Organize your music collection from the command line	P		beetcamp
 bemoji-git	Emoji picker that remembers your favorites.	A	
 bibclean	BibTeX and Scribe bibliography prettyprinter and syntax checker	A	
 biber	A Unicode-capable BibTeX replacement for biblatex users	R	
@@ -63,7 +61,6 @@ dust	A more intuitive version of du in rust	R
 efm-langserver	General purpose Language Server	A	
 enca	Charset analyser and converter	R	
 entr	Run arbitrary commands when files change	R	
-euporie	View and work with ipnb Python notebooks from the cli	P
 exa	ls replacement	R	
 exercism-bin	Command line client for exercism.io	A	
 exfat-utils	Utilities for exFAT file system	R	
@@ -110,7 +107,6 @@ imv	Image viewer for Wayland and X11	R
 intel-ucode	Microcode update files for Intel CPUs	R	
 iputils	Network monitoring tools, including ping	R	
 ipython	An enhanced Interactive Python shell.	R	
-isbntools	A variety of tools to work with isbn addresses	P
 iucode-tool	Tool to manipulate Intel® IA-32/X86-64 microcode bundles	R	
 iwd	Internet Wireless Daemon	R	
 jiq-bin	Interactive JSON query tool using jq expressions	A	
@@ -152,7 +148,6 @@ maim	Utility to take a screenshot using imlib2	R
 mako	Lightweight notification daemon for Wayland	R	
 man-db	A utility for reading man pages	R	
 man-pages	Linux man pages	R	
-markdown-anki-decks	Construct and modify anki decks directly with markdown	P
 markdownlint-cli	MarkdownLint Command Line Interface	A	
 masterpdfeditor-free	A complete solution for creation and editing PDF files - Free version without watermark	A	
 mbsync-git	free (GPL) mailbox synchronization program	A	
@@ -203,7 +198,6 @@ offpunk-git	Fork of the command-line Gemini client AV-98 with added offline capa
 oh-my-zsh-git	A community-driven framework for managing your zsh configuration. Includes 180+ optional plugins and over 120 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community	A	
 os-prober	Utility to detect other OSes on a set of drives	R	
 pacman-contrib	Contributed scripts and tools for pacman systems	R	
-papis-tui	A tui interface for papis bibliography manager	P		whoosh
 parallel	A shell tool for executing jobs in parallel	R	
 parsec-bin	Remotely connect to a gaming pc for a low latency remote computing experience	A	
 paru-bin	Feature packed AUR helper	A	
@@ -313,6 +307,7 @@ tut	A TUI for Mastodon with vim inspired keys	A
 typescript-language-server	Language Server Protocol (LSP) implementation for TypeScript using tsserver	R	
 udiskie	Removable disk automounter using udisks	R	
 ufw	Uncomplicated and easy to use CLI tool for managing a netfilter firewall	R	
+unclutter	A small program for hiding the mouse cursor	R	
 unrar	The RAR uncompression program	R	
 unrtf	Command-line program which converts RTF documents to other formats	R	
 urlview-xdg-git	A curses URL parser for text files. Git version, adds support for QUITONLAUNCH option and XDG Base Directory specification compliance.	A	
@@ -348,9 +343,9 @@ xdg-user-dirs	Manage user directories like ~/Desktop and ~/Music	R
 xsv	A CLI for indexing, slicing, analyzing, splitting and joining CSV files	R	
 yaml-language-server	YAML Language Server	R	
 yarn	Fast, reliable, and secure dependency management	R	
+yubikey-manager	Python library and command line tool for configuring a YubiKey	R	
 yt-dlp	A youtube-dl fork with additional features and fixes	R	
 ytfzf	A POSIX script to find and watch youtube videos from the terminal	R	
-yubikey-manager	Python library and command line tool for configuring a YubiKey	R	
 zathura-cb	Adds comic book support to zathura	R	
 zathura-djvu	DjVu support for Zathura	R	
 zathura-pdf-mupdf	PDF support for Zathura (MuPDF backend) (Supports PDF, ePub, and OpenXPS)	R	

bootstrap/update_package_list.sh

@@ -3,7 +3,7 @@ BOOTSTRAP_DIR=${BOOTSTRAP_DIR:-$(pwd)/bootstrap}
 INPUTFILES=$(find "${BOOTSTRAP_DIR}" -type f -name 'packages*.tsv')
 OUTPUTFILE=${BOOTSTRAP_DIR}/packages_testing.tsv
 
-pkg_all=$(pacman -Qqett)
+pkg_all=$(pacman -Qqett | grep -v "$(pacman -Qqg base-devel)")
 
 pkg_repo=$(pacman -Qqn)
 pkg_aur=$(pacman -Qqm)

desktop/.config/river/init

@@ -39,7 +39,7 @@ riverctl map normal $mod+Shift C close
 # Open terminal
 riverctl map normal $mod Return spawn "$term"
 # Open floating terminal
-riverctl map normal $mod+Control Return spawn "$term -e --class float"
+riverctl map normal $mod+Control Return spawn "$term start --class float"
 
 # Open run menu
 riverctl map normal $mod Space spawn "bemenu-run"
@@ -61,7 +61,7 @@ riverctl map normal $mod+Shift O spawn "qutedmenu"
 riverctl map normal $mod+Shift Space spawn "clipman pick --tool=bemenu"
 
 # Open floating calculator
-riverctl map normal $mod+Shift R spawn "$term -e --class float qalc"
+riverctl map normal $mod+Shift R spawn "$term start --class float -e qalc"
 
 # Open emoji picker
 riverctl map normal $mod+Shift E spawn "bemoji -nt"
@@ -77,7 +77,7 @@ riverctl map normal $mod+Shift S spawn 'flavourchoose'
 riverctl map normal $mod+Shift P spawn "pass-pick"
 
 # File upload
-riverctl map normal $mod+Shift U spawn "$term -e --class float sharefile | xargs notify-send"
+riverctl map normal $mod+Shift U spawn "$term start --class float -e sharefile | xargs notify-send"
 
 # # Screenshot
 riverctl map normal None Print spawn "screenshot"

desktop/.config/waybar/config

@@ -51,6 +51,9 @@
     "custom/events": {
         "format": "{}",
         "interval": 300,
+        "format-icons": {
+            "default": ""
+        },
         "exec": "~/.config/waybar/modules/khal.py 2>/dev/null",
         "exec-if": "command -v khal >/dev/null 2>&1",
         "return-type": "json",

desktop/.config/waybar/modules/khal.py

@@ -28,7 +28,7 @@ output = "\n".join(new_lines).strip()
 if today in output:
     data["text"] = " " + output.split("\n")[1]
 else:
-    data["text"] = "  "
+    data["text"] = ""
 
 data["tooltip"] = output
 

nvim/.config/nvim/lazy-lock.json

@@ -21,51 +21,52 @@
   "cmp_luasnip": { "branch": "master", "commit": "18095520391186d634a0045dacaa346291096566" },
   "completion-vcard": { "branch": "master", "commit": "2220fd517a985ececed1adcf0e5be8f2815564c7" },
   "dial.nvim": { "branch": "master", "commit": "54b503f906bc9e5ab85288414840a1b86d40769f" },
-  "dressing.nvim": { "branch": "master", "commit": "f16d7586fcdd8b2e3850d0abb7e46f944125cc25" },
+  "dressing.nvim": { "branch": "master", "commit": "66e4990240f92e31b0d5e4df6deb6bb0160ae832" },
   "easyread.nvim": { "branch": "main", "commit": "0b07e315a4cd7d700c4a794bdddbec79fdc2628b" },
   "fidget.nvim": { "branch": "main", "commit": "0ba1e16d07627532b6cae915cc992ecac249fb97" },
-  "friendly-snippets": { "branch": "main", "commit": "b471f5419155ce832eff71ad8920ea8cfbd54840" },
+  "formatter.nvim": { "branch": "master", "commit": "fa4f2729cc2909db599169f22d8e55632d4c8d59" },
+  "friendly-snippets": { "branch": "main", "commit": "1d0dac346de7c6895ac72528df3276386c6b149b" },
   "fwatch.nvim": { "branch": "main", "commit": "a691f7349dc66285cd75a1a698dd28bca45f2bf8" },
   "gitsigns.nvim": { "branch": "main", "commit": "bb808fc7376ed7bac0fbe8f47b83d4bf01738167" },
   "jupyter-kernel.nvim": { "branch": "main", "commit": "5b409598033884a3d819e2a3bcd1fe340bc8d783" },
-  "lazy.nvim": { "branch": "main", "commit": "f145e6f42a56306c5536e9efbfe41f7efbec285d" },
+  "lazy.nvim": { "branch": "main", "commit": "aba872ec78ffe7f7367764ab0fff6f0170421fde" },
   "lightspeed.nvim": { "branch": "main", "commit": "299eefa6a9e2d881f1194587c573dad619fdb96f" },
-  "lsp-zero.nvim": { "branch": "v2.x", "commit": "8fda9a849d6ab4196ecf129905764ddefdfb64b5" },
+  "lsp-format.nvim": { "branch": "master", "commit": "ca0df5c8544e51517209ea7b86ecc522c98d4f0a" },
+  "lsp-zero.nvim": { "branch": "v2.x", "commit": "56a50ebe9b0f46ecfabca3f1613084c74fd45414" },
   "lsp_signature.nvim": { "branch": "master", "commit": "4665921ff8e30601c7c1328625b3abc1427a6143" },
   "lualine.nvim": { "branch": "master", "commit": "05d78e9fd0cdfb4545974a5aa14b1be95a86e9c9" },
   "magma-nvim-goose": { "branch": "main", "commit": "5d916c39c1852e09fcd39eab174b8e5bbdb25f8f" },
   "markdown-preview.nvim": { "branch": "master", "commit": "9becceee5740b7db6914da87358a183ad11b2049" },
-  "mason-lspconfig.nvim": { "branch": "main", "commit": "5230617372e656d4a2e1e236e03bf7e7b4b97273" },
+  "mason-lspconfig.nvim": { "branch": "main", "commit": "90a8bbf106b85b76951a34c542058ffa807de2b1" },
-  "mason-null-ls.nvim": { "branch": "main", "commit": "cfbd83909cbc56e2f07cb3f8a03157e069c5c91c" },
+  "mason.nvim": { "branch": "main", "commit": "253961cfe9b0a63b2524088be294acd7522366e5" },
-  "mason.nvim": { "branch": "main", "commit": "7d7efc738e08fc5bee822857db45cb6103f0b0c1" },
   "mini.nvim": { "branch": "main", "commit": "889be69623395ad183ae6f3c21c8efe006350226" },
   "nabla.nvim": { "branch": "master", "commit": "8c143ad2b3ab3b8ffbd51e238ccfcbd246452a7e" },
   "neural": { "branch": "main", "commit": "155618730b87a67655bdde373ee27bfce8b07ac9" },
-  "nui.nvim": { "branch": "main", "commit": "7a524120a7a70761b5a65b602fd235a65cb005aa" },
+  "nui.nvim": { "branch": "main", "commit": "698e75814cd7c56b0dd8af4936bcef2d13807f3c" },
-  "null-ls.nvim": { "branch": "main", "commit": "a138b14099e9623832027ea12b4631ddd2a49256" },
   "nvim-base16": { "branch": "master", "commit": "4f3aa29f49b38edb6db1c52cea57e64ce3de2373" },
-  "nvim-cmp": { "branch": "main", "commit": "fc0f694af1a742ada77e5b1c91ff405c746f4a26" },
+  "nvim-cmp": { "branch": "main", "commit": "d153771162bd9795d9f7142df5c674b61066a585" },
   "nvim-colorizer.lua": { "branch": "master", "commit": "dde3084106a70b9a79d48f426f6d6fec6fd203f7" },
-  "nvim-lspconfig": { "branch": "master", "commit": "458fa2ee2115c693ca48a04afa65f6de6b40a2db" },
+  "nvim-lspconfig": { "branch": "master", "commit": "df58d91c9351a9dc5be6cf8d54f49ab0d9a64e73" },
-  "nvim-notify": { "branch": "master", "commit": "ea9c8ce7a37f2238f934e087c255758659948e0f" },
+  "nvim-notify": { "branch": "master", "commit": "bdd647f61a05c9b8a57c83b78341a0690e9c29d7" },
-  "nvim-surround": { "branch": "main", "commit": "211eaad7c6d01ef4ac02cba9052b3082ec232101" },
+  "nvim-surround": { "branch": "main", "commit": "e6047128e57c1aff1566fb9f627521d2887fc77a" },
-  "nvim-toggleterm.lua": { "branch": "main", "commit": "95204ece0f2a54c89c4395295432f9aeedca7b5f" },
+  "nvim-toggleterm.lua": { "branch": "main", "commit": "026dff5e2b504941cf172691561a67ea362596aa" },
-  "nvim-tree.lua": { "branch": "master", "commit": "f5d970d4506f385b29534252d8c15a782fa53034" },
+  "nvim-tree.lua": { "branch": "master", "commit": "89816ace70642e9d3db0dab3dc68918f8979ec31" },
   "nvim-treesitter": { "branch": "master", "commit": "cc360a9beb1b30d172438f640e2c3450358c4086" },
-  "nvim-treesitter-context": { "branch": "master", "commit": "e2ea37627c0681421ccf4a3cf19d68bb958e1817" },
+  "nvim-treesitter-context": { "branch": "master", "commit": "f24a86c32238867f24fbff49913db0068f8488d2" },
   "nvim-treesitter-textsubjects": { "branch": "master", "commit": "b913508f503527ff540f7fe2dcf1bf1d1f259887" },
   "nvim-ts-context-commentstring": { "branch": "main", "commit": "0bf8fbc2ca8f8cdb6efbd0a9e32740d7a991e4c3" },
-  "nvim-ts-rainbow2": { "branch": "master", "commit": "c00d61ab7517530c49457ba49186776e6611a3e1" },
+  "nvim-ts-rainbow2": { "branch": "master", "commit": "cee4601ff8aac73dee4afa1074814343bb5a0b80" },
-  "nvim-web-devicons": { "branch": "master", "commit": "2a125024a137677930efcfdf720f205504c97268" },
+  "nvim-web-devicons": { "branch": "master", "commit": "986875b7364095d6535e28bd4aac3a9357e91bbe" },
-  "otter.nvim": { "branch": "main", "commit": "242d180e7f23cc2af6b5d5193bc50909408caef7" },
+  "otter.nvim": { "branch": "main", "commit": "4630e71b3e94552b7b33ddbfca061d92d0b466c2" },
   "playground": { "branch": "master", "commit": "2b81a018a49f8e476341dfcb228b7b808baba68b" },
   "plenary.nvim": { "branch": "master", "commit": "253d34830709d690f013daf2853a9d21ad7accab" },
   "popup.nvim": { "branch": "master", "commit": "b7404d35d5d3548a82149238289fa71f7f6de4ac" },
-  "quarto-nvim": { "branch": "main", "commit": "b299266c6287d74b60480fae348d629ec1dc02bb" },
+  "quarto-nvim": { "branch": "main", "commit": "43898e09b5f49dee35ff01ff0f873e7d600376be" },
   "significant.nvim": { "branch": "main", "commit": "5450e9d5917dc6aa9afb0fcbe32355799b8303fb" },
   "smartcolumn.nvim": { "branch": "main", "commit": "0c572e3eae48874f25b74394a486f38cadb5c958" },
+  "spellsitter.nvim": { "branch": "master", "commit": "4af8640d9d706447e78c13150ef7475ea2c16b30" },
   "symbols-outline.nvim": { "branch": "master", "commit": "512791925d57a61c545bc303356e8a8f7869763c" },
-  "telescope-fzf-native.nvim": { "branch": "main", "commit": "9bc8237565ded606e6c366a71c64c0af25cd7a50" },
+  "telescope-fzf-native.nvim": { "branch": "main", "commit": "580b6c48651cabb63455e97d7e131ed557b8c7e2" },
   "telescope.nvim": { "branch": "master", "commit": "c1a2af0af69e80e14e6b226d3957a064cd080805" },
   "twilight.nvim": { "branch": "main", "commit": "8bb7fa7b918baab1ca81b977102ddb54afa63512" },
   "vifm.vim": { "branch": "master", "commit": "a8130c37d144b51d84bee19f0532abcd3583383f" },
@@ -76,9 +77,9 @@
   "vim-oscyank": { "branch": "main", "commit": "ffe827a27dae98aa826e2295336c650c9a434da0" },
   "vim-pandoc-syntax": { "branch": "master", "commit": "4268535e1d33117a680a91160d845cd3833dfe28" },
   "vim-spellsync": { "branch": "master", "commit": "3d6dd50de9c4d953cc16638112a6ae196df41463" },
-  "which-key.nvim": { "branch": "main", "commit": "e271c28118998c93a14d189af3395812a1aa646c" },
+  "which-key.nvim": { "branch": "main", "commit": "912ef1a9b018bbe45df1529345e42ae0ac896d63" },
-  "wrapping.nvim": { "branch": "master", "commit": "5e87f1424c86c50d3bc205830aa56ed1cad45467" },
+  "wrapping.nvim": { "branch": "master", "commit": "c04a7163dc692d80a2907d06a3af8df1fedffec2" },
   "zen-mode.nvim": { "branch": "main", "commit": "6e6c963d70a8e47854fa656987666bfb863f9c4e" },
   "zettelkasten.nvim": { "branch": "main", "commit": "0e77624689b470410f5355b613d45219c9350264" },
-  "zk-nvim": { "branch": "main", "commit": "5ddb53688035d115f941f0c8255f6e6618e608ac" }
+  "zk-nvim": { "branch": "main", "commit": "275578853dc76d282ee5b31f86cd3a4f02d91f2f" }
 }

nvim/.config/nvim/lua/maps.lua

@@ -155,7 +155,7 @@ map('n', '<leader>fh',
     ":lua require 'telescope.builtin'.find_files({hidden=true})<cr>",
     { desc = 'find hidden files' })
 -- general full-text search in cwd with rg
-map('n', '<leader>fw', ":lua require 'telescope.builtin'.live_grep()<cr>",
+map('n', '<leader>fF', ":lua require 'telescope.builtin'.live_grep()<cr>",
     { desc = 'grep search' })
 
 -- git status

nvim/.config/nvim/lua/plug/_format.lua

@@ -0,0 +1,64 @@
+-- for each filetype autoformat on save
+-- TODO can automatically gather from formatter table keys?
+local prettierfmt = {
+    function()
+        local set_quotes = "--single-quote"
+        if vim.bo.filetype == "json" then set_quotes = "--double-quote" end
+        return {
+            exe = "prettier",
+            args = {
+                "--stdin-filepath", vim.api.nvim_buf_get_name(0), set_quotes
+            },
+            stdin = true
+        }
+    end
+}
+local shfmt = {
+    function() return { exe = "shfmt", args = { "-i 4" }, stdin = true } end
+}
+
+local formatters = {
+    bash = shfmt,
+    cpp = {
+        function()
+            return {
+                exe = "clang-format",
+                args = {},
+                stdin = true,
+                cwd = vim.fn.expand('%:p:h') -- Run clang-format in cwd of the file.
+            }
+        end
+    },
+    go = { function() return { exe = "goimports", stdin = true } end },
+    html = prettierfmt,
+    javascript = prettierfmt,
+    json = prettierfmt,
+    lua = {
+        function()
+            return { exe = "lua-format", args = { "--indent-width", 4 }, stdin = true }
+        end
+    },
+    python = { function() return { exe = "black", args = { "-" }, stdin = true } end },
+    rust = {
+        function()
+            return { exe = "rustfmt", args = { "--emit=stdout" }, stdin = true }
+        end
+    },
+    sh = shfmt,
+    typescript = prettierfmt,
+    zsh = shfmt
+}
+
+require('formatter').setup({ logging = false, filetype = formatters })
+
+-- Format on save:
+-- DISABLED FOR NOW, due to messing with git contributions if they
+-- do not use a formatter. Instead, formatting with key mapping used.
+-- gather filetypes to autocorrect for each activated formatter above
+-- for k, _ in pairs(formatters) do
+--     vim.api.nvim_create_autocmd({"Filetype " .. k}, {
+--         command = "autocmd BufWritePost <buffer> FormatWrite",
+--         desc = "Automatically format on write",
+--         group = vim.api.nvim_create_augroup('formatonsave', {clear = true})
+--     })
+-- end

nvim/.config/nvim/lua/plug/_lsp.lua

@@ -1,191 +1,99 @@
 local lsp = require("lsp-zero")
 
-vim.diagnostic.config({ virtual_text = true })
+vim.diagnostic.config { virtual_text = true }
 vim.fn.sign_define("DiagnosticSignError", { text = "✘", texthl = "DiagnosticSignError" })
 vim.fn.sign_define("DiagnosticSignWarn", { text = "", texthl = "DiagnosticSignWarn" })
 vim.fn.sign_define("DiagnosticSignInfo", { text = "", texthl = "DiagnosticSignInfo" })
 vim.fn.sign_define("DiagnosticSignHint", { text = "", texthl = "DiagnosticSignHint" })
 
 lsp.ensure_installed({
-	"astro",
+    'arduino_language_server',
-	"arduino_language_server",
+    'bashls',
-	"bashls",
+    'beancount',
-	"beancount",
+    'clangd',
-	"clangd",
+    'dockerls',
-	"dockerls",
+    'docker_compose_language_service',
-	"docker_compose_language_service",
+    'lua_ls',
-	"lua_ls",
+    'pyright',
-	"pyright",
+    'ruff_lsp',
-	"ruff_lsp",
+    'taplo',
-	"taplo",
+    'yamlls',
-	"yamlls",
-	"tsserver",
-	"cssls",
-	"tailwindcss",
 })
 lsp.preset({ name = "recommended", set_lsp_keymaps = false })
 lsp.on_attach(function(client, bufnr)
-	local map = vim.keymap.set
+    require("lsp-format").on_attach(client, bufnr)
-	map("n", "[d", "<cmd>lua vim.diagnostic.goto_prev()<cr>", { buffer = bufnr, desc = "Previous diagnostic" })
-	map("n", "]d", "<cmd>lua vim.diagnostic.goto_next()<cr>", { buffer = bufnr, desc = "Next diagnostic" })
-	map(
-		"n",
-		"[e",
-		"<cmd>lua vim.diagnostic.goto_prev({severity = vim.diagnostic.severity.ERROR})<cr>",
-		{ buffer = bufnr, desc = "Previous error" }
-	)
-	map(
-		"n",
-		"]e",
-		"<cmd>lua vim.diagnostic.goto_next({severity = vim.diagnostic.severity.ERROR})<cr>",
-		{ buffer = bufnr, desc = "Next error" }
-	)
 
-	local prefix = require("which-key").register
+    local map = vim.keymap.set
-	prefix({ ["<localleader>l"] = { name = "+lsp" } })
+    map('n', '[d', '<cmd>lua vim.diagnostic.goto_prev()<cr>',
-	map("n", "<localleader>li", "<cmd>LspInfo<cr>", { buffer = bufnr, desc = "Lsp Info" })
+        { buffer = bufnr, desc = 'Previous diagnostic' })
-	map(
+    map('n', ']d', '<cmd>lua vim.diagnostic.goto_next()<cr>',
-		"n",
+        { buffer = bufnr, desc = 'Next diagnostic' })
-		"<localleader>ld",
+    map('n', '[e',
-		"<cmd>lua vim.diagnostic.open_float()<cr>",
+        '<cmd>lua vim.diagnostic.goto_prev({severity = vim.diagnostic.severity.ERROR})<cr>',
-		{ buffer = bufnr, desc = "Line diagnostics" }
+        { buffer = bufnr, desc = 'Previous error' })
-	)
+    map('n', ']e',
-	map("n", "<localleader>la", "<cmd>lua vim.lsp.buf.code_action()<cr>", { buffer = bufnr, desc = "Codeactions" })
+        '<cmd>lua vim.diagnostic.goto_next({severity = vim.diagnostic.severity.ERROR})<cr>',
-	map("n", "<localleader>ln", "<cmd>lua vim.lsp.buf.rename()<cr>", { buffer = bufnr, desc = "Rename element" })
+        { buffer = bufnr, desc = 'Next error' })
-	if vim.fn.exists(":Telescope") then
+
-		map("n", "<localleader>lr", "<cmd>Telescope lsp_references()<cr>", { buffer = bufnr, desc = "References" })
+    local prefix = require('which-key').register
-		map("n", "<localleader>lf", "<cmd>Telescope lsp_definitions<cr>", { buffer = bufnr, desc = "Definition" })
+    prefix({ ['<localleader>l'] = { name = "+lsp" } })
-		map(
+    map('n', '<localleader>li', '<cmd>LspInfo<cr>',
-			"n",
+        { buffer = bufnr, desc = 'Lsp Info' })
-			"<localleader>lt",
+    map('n', '<localleader>ld', '<cmd>lua vim.diagnostic.open_float()<cr>',
-			"<cmd>Telescope lsp_type_definitions<cr>",
+        { buffer = bufnr, desc = 'Line diagnostics' })
-			{ buffer = bufnr, desc = "Type definition" }
+    map('n', '<localleader>la', '<cmd>lua vim.lsp.buf.code_action()<cr>',
-		)
+        { buffer = bufnr, desc = 'Codeactions' })
-		map(
+    map('n', '<localleader>ln', '<cmd>lua vim.lsp.buf.rename()<cr>',
-			"n",
+        { buffer = bufnr, desc = 'Rename element' })
-			"<localleader>lm",
+    if vim.fn.exists(':Telescope') then
-			"<cmd>Telescope lsp_implementations<cr>",
+        map('n', '<localleader>lr', '<cmd>Telescope lsp_references()<cr>',
-			{ buffer = bufnr, desc = "Implementation" }
+            { buffer = bufnr, desc = 'References' })
-		)
+        map('n', '<localleader>lf', '<cmd>Telescope lsp_definitions<cr>',
+            { buffer = bufnr, desc = 'Definition' })
+        map('n', '<localleader>lt', '<cmd>Telescope lsp_type_definitions<cr>',
+            { buffer = bufnr, desc = 'Type definition' })
+        map('n', '<localleader>lm', '<cmd>Telescope lsp_implementations<cr>',
+            { buffer = bufnr, desc = 'Implementation' })
     else
-		map("n", "<localleader>lr", "<cmd>lua vim.lsp.buf.references()<cr>", { buffer = bufnr, desc = "References" })
+        map('n', '<localleader>lr', '<cmd>lua vim.lsp.buf.references()<cr>',
-		map("n", "<localleader>lf", "<cmd>lua vim.lsp.buf.definition()<cr>", { buffer = bufnr, desc = "Definition" })
+            { buffer = bufnr, desc = 'References' })
-		map(
+        map('n', '<localleader>lf', '<cmd>lua vim.lsp.buf.definition()<cr>',
-			"n",
+            { buffer = bufnr, desc = 'Definition' })
-			"<localleader>lt",
+        map('n', '<localleader>lt', '<cmd>lua vim.lsp.buf.type_definition()<cr>',
-			"<cmd>lua vim.lsp.buf.type_definition()<cr>",
+            { buffer = bufnr, desc = 'Type definition' })
-			{ buffer = bufnr, desc = "Type definition" }
+        map('n', '<localleader>lm', '<cmd>lua vim.lsp.buf.implementation()<cr>',
-		)
+            { buffer = bufnr, desc = 'Implementation' })
-		map(
-			"n",
-			"<localleader>lm",
-			"<cmd>lua vim.lsp.buf.implementation()<cr>",
-			{ buffer = bufnr, desc = "Implementation" }
-		)
     end
     if client.server_capabilities.document_formatting then
-		map(
+        map('n', '<localleader>lf', "<cmd>lua vim.lsp.buf.formatting()<CR>",
-			"n",
+            { buffer = bufnr, desc = 'Format document' })
-			"<localleader>lf",
-			"<cmd>lua vim.lsp.buf.formatting()<CR>",
-			{ buffer = bufnr, desc = "Format document" }
-		)
     end
 
-	map("n", "K", "<cmd>lua vim.lsp.buf.hover()<cr>", { buffer = bufnr, desc = "Hover definition" })
+    map('n', 'K', '<cmd>lua vim.lsp.buf.hover()<cr>',
-	map("n", "<localleader>lc", "<cmd>lua vim.lsp.buf.declaration()<cr>", { buffer = bufnr, desc = "Declaration" })
+        { buffer = bufnr, desc = 'Hover definition' })
-	map(
+    map('n', '<localleader>lc', '<cmd>lua vim.lsp.buf.declaration()<cr>',
-		"n",
+        { buffer = bufnr, desc = 'Declaration' })
-		"<localleader>ls",
+    map('n', '<localleader>ls', '<cmd>lua vim.lsp.buf.signature_help()<cr>',
-		"<cmd>lua vim.lsp.buf.signature_help()<cr>",
+        { buffer = bufnr, desc = 'Signature help' })
-		{ buffer = bufnr, desc = "Signature help" }
-	)
 end)
 lsp.nvim_workspace()
 -- ensure python virtualenv is determined automatically on lsp start
-require("lspconfig").pyright.setup({
+lsp.configure("pyright", {
     on_attach = function(client, _)
-		local python_path, msg = require("util.pyenv").get_path(client.config.root_dir)
+        local python_path, msg = require('util.pyenv').get_path(client.config
-		vim.notify(string.format("%s\n%s", msg, python_path))
+            .root_dir)
+        vim.notify(string.format('%s\n%s', msg, python_path))
         client.config.settings.python.pythonPath = python_path
-	end,
+    end
 })
 -- set up arduino with the help of arduino.nvim plugin
-require("lspconfig").arduino_language_server.setup({
+require('lspconfig').arduino_language_server.setup({
-	on_new_config = require("arduino").on_new_config,
+    on_new_config = require('arduino').on_new_config
-})
-require("lspconfig").lua_ls.setup(lsp.nvim_lua_ls())
-
--- map filetypes (rhs) to individual servers (lhs)
--- most will presumably use null_ls however
-local format_servers = {
-	["null-ls"] = {
-		"astro",
-		"javascript",
-		"javascriptreact",
-		"typescript",
-		"typescriptreact",
-		"vue",
-		"css",
-		"scss",
-		"less",
-		"html",
-		"json",
-		"jsonc",
-		"yaml",
-		"markdown",
-		"markdown.mdx",
-		"graphql",
-		"handlebars",
-		"python",
-		"sh",
-		"zsh",
-		"bash",
-		"lua",
-		"luau",
-	},
-}
-lsp.format_on_save({
-	format_opts = {
-		async = true,
-	},
-	servers = format_servers,
-})
-lsp.format_mapping("gq", {
-	format_opts = {
-		async = false,
-	},
-	servers = format_servers,
 })
+require('lspconfig').lua_ls.setup(lsp.nvim_lua_ls())
 
 lsp.setup()
 
-local null_ls = require("null-ls")
-null_ls.setup({})
-require("mason-null-ls").setup({
-	ensure_installed = { "black", "prettier", "shfmt", "eslint-lsp", "stylua", "jq" },
-	automatic_installation = false,
-	handlers = {
-		shfmt = function(_, _)
-			null_ls.register(null_ls.builtins.formatting.shfmt.with({
-				extra_filetypes = { "bash", "zsh" },
-			}))
-		end,
-		prettier = function(_, _)
-			null_ls.register(null_ls.builtins.formatting.prettier.with({
-				extra_filetypes = { "astro" },
-			}))
-		end,
-		eslint = function(_, _)
-			null_ls.register(null_ls.builtins.diagnostics.eslint.with({
-				extra_filetypes = { "astro" },
-			}))
-			null_ls.register(null_ls.builtins.code_actions.eslint.with({
-				extra_filetypes = { "astro" },
-			}))
-		end,
-	},
-})
 
 local luasnip = require("luasnip")
 local has_words_before = function()
@@ -218,56 +126,53 @@ local kind_icons = {
     Struct = "",
     Event = "",
     Operator = "",
-	TypeParameter = "",
+    TypeParameter = ""
 }
-local cmp = require("cmp")
+local cmp = require 'cmp'
 cmp.setup({
-	window = { documentation = cmp.config.window.bordered() },
+    window = {
+        documentation = cmp.config.window.bordered()
+    },
     snippet = {
         expand = function(args)
-			require("luasnip").lsp_expand(args.body)
+            require('luasnip').lsp_expand(args.body)
-		end,
+        end
     },
     sources = {
-		{ name = "nvim_lsp" },
+        { name = 'nvim_lsp' },
-		{ name = "otter" },
+        { name = 'otter' },
-		{ name = "luasnip", keyword_length = 2 },
+        { name = 'luasnip',          keyword_length = 2 },
-		{ name = "pandoc_references" },
+        { name = 'pandoc_references' },
-		{ name = "nvim_lua" },
+        { name = 'nvim_lua' },
         {
-			name = "beancount",
+            name = 'beancount',
             option = {
-				account = vim.env["HOME"] .. "/documents/records/budget/main.beancount", -- TODO implement dynamically
+                account = vim.env["HOME"] .. '/documents/records/budget/main.beancount' -- TODO implement dynamically
+            }
         },
-		},
+        { name = 'calc' },
-		{ name = "calc" },
+        { name = 'path' },
-		{ name = "path" },
+        { name = 'buffer',       keyword_length = 3 },
-		{ name = "buffer", keyword_length = 3 },
+        { name = 'digraphs' },
-		{ name = "digraphs" },
+        { name = 'latex_symbols' },
-		{ name = "latex_symbols" },
+        { name = 'spell',        keyword_length = 3 },
-		{ name = "spell", keyword_length = 3 },
+        { name = 'tmux' },
-		{ name = "tmux" }, -- { name = 'rg',           keyword_length = 5 },
+        --{ name = 'rg',           keyword_length = 5 },
-		{ name = "vCard" },
+        { name = 'vCard' },
     },
     mapping = cmp.mapping.preset.insert({
-		["<C-b>"] = cmp.mapping.scroll_docs(-4),
+        ['<C-b>'] = cmp.mapping.scroll_docs(-4),
-		["<C-f>"] = cmp.mapping.scroll_docs(4),
+        ['<C-f>'] = cmp.mapping.scroll_docs(4),
         ["<CR>"] = cmp.mapping({
             i = function(fallback)
                 if cmp.visible() and cmp.get_active_entry() then
-					cmp.confirm({
+                    cmp.confirm({ behavior = cmp.ConfirmBehavior.Replace, select = false })
-						behavior = cmp.ConfirmBehavior.Replace,
-						select = false,
-					})
                 else
                     fallback()
                 end
             end,
             s = cmp.mapping.confirm({ select = true }),
-			c = cmp.mapping.confirm({
+            c = cmp.mapping.confirm({ behavior = cmp.ConfirmBehavior.Replace, select = false }), -- disable selection in cmd mode
-				behavior = cmp.ConfirmBehavior.Replace,
-				select = false,
-			}), -- disable selection in cmd mode
         }),
         ["<Tab>"] = cmp.mapping(function(fallback)
             if cmp.visible() then
@@ -297,7 +202,7 @@ cmp.setup({
         format = function(entry, vim_item)
             -- Kind icons, removing kind text leaving only icon
             -- vim_item.kind = string.format('%s %s', kind_icons[vim_item.kind], vim_item.kind)
-			vim_item.kind = string.format("%s", kind_icons[vim_item.kind])
+            vim_item.kind = string.format('%s', kind_icons[vim_item.kind])
             -- Source
             vim_item.menu = ({
                 buffer = "[Buf]",
@@ -312,18 +217,18 @@ cmp.setup({
                 vCard = "[vCrd]",
             })[entry.source.name]
             return vim_item
-		end,
+        end
     },
 })
 -- `/` cmdline setup.
-cmp.setup.cmdline("/", {
+cmp.setup.cmdline('/', {
     mapping = cmp.mapping.preset.cmdline(),
-	sources = { { name = "buffer" } },
+    sources = { { name = 'buffer' } }
 })
 -- `:` cmdline setup.
-cmp.setup.cmdline(":", {
+cmp.setup.cmdline(':', {
     mapping = cmp.mapping.preset.cmdline(),
-	sources = cmp.config.sources({ { name = "path" } }, {
+    sources = cmp.config.sources({ { name = 'path' } }, {
-		{ name = "cmdline", option = { ignore_cmds = { "Man", "!" } } },
+        { name = 'cmdline', option = { ignore_cmds = { 'Man', '!' } } }
-	}),
+    })
 })

nvim/.config/nvim/lua/plugins.lua

@@ -8,7 +8,9 @@ return {
     { 'ggandor/lightspeed.nvim',           event = "VeryLazy" },               -- jump between letters with improved fFtT quicksearch, mimics sneak
     {
         'lewis6991/gitsigns.nvim',                                             -- show vcs changes on left-hand gutter
-        config = function() require('plug._gitsigns') end,
+        config = function()
+            require('plug._gitsigns')
+        end,
         event = "BufRead"
     }, { "m4xshen/smartcolumn.nvim", config = true }, -- auto-hiding colorcolumn
     -- files
@@ -27,10 +29,16 @@ return {
     'NvChad/nvim-colorizer.lua', -- color hex, named colors in the correct preview scheme
     config = function()
         require('colorizer').setup({
-            user_default_options = { mode = 'virtualtext' }
+            user_default_options = {
+                mode = 'virtualtext'
+            }
         })
     end,
     event = "VeryLazy"
+}, {
+    'mhartington/formatter.nvim', -- auto formatting on save
+    config = function() require('plug._format') end,
+    event = "VeryLazy"
 },                                                                                    -- editing
     { 'kylechui/nvim-surround',  version = '*',  config = true, event = "VeryLazy" }, -- surround things with other things using ys/cs/ds
     {
@@ -186,7 +194,8 @@ return {
             { 'romgrk/nvim-treesitter-context', config = true },
             'JoosepAlviste/nvim-ts-context-commentstring'
         }
-    }, { 'nvim-treesitter/playground',        cmd = "TSPlaygroundToggle" }, -- interactively view and query the treesitter tree
+    },
+    { 'nvim-treesitter/playground',               cmd = "TSPlaygroundToggle" }, -- interactively view and query the treesitter tree
     {
         'RRethy/nvim-treesitter-textsubjects',                                  -- allows using . and ; to target treesitter branches
         config = function()
@@ -202,7 +211,11 @@ return {
         end,
         event = "BufReadPre"
     }, {
-    -- lsp
+    'lewis6991/spellsitter.nvim', -- uses treesitter to highlight spelling errors
+    config = function() require('spellsitter').setup() end,
+    event = "BufReadPre"
+}, -- lsp
+    {
         "VonHeikemen/lsp-zero.nvim",
         dependencies = {
             { "neovim/nvim-lspconfig",         branch = "master" },
@@ -221,19 +234,12 @@ return {
                 "saadparwaiz1/cmp_luasnip"
             }
         }, "L3MON4D3/LuaSnip", "rafamadriz/friendly-snippets",
-        -- { "lukas-reineke/lsp-format.nvim", config = true },
+            { "lukas-reineke/lsp-format.nvim", config = true },
-        { "j-hui/fidget.nvim",     config = true }, -- loading animations for some LSP
+            { "j-hui/fidget.nvim",             config = true } -- loading animations for some LSP
-        {
-            "jay-babu/mason-null-ls.nvim",
-            event = { "BufReadPre", "BufNewFile" },
-            dependencies = {
-                "williamboman/mason.nvim", "jose-elias-alvarez/null-ls.nvim"
-            },
-        }
         },
         config = function() require('plug._lsp') end,
         branch = "v2.x"
-}, { 'simrat39/symbols-outline.nvim', config = true, event = "VeryLazy" },   -- vista-like outline view for code
+    }, { 'simrat39/symbols-outline.nvim', config = true, event = "VeryLazy" }, -- vista-like outline view for code
     { 'ray-x/lsp_signature.nvim',      config = true },                        -- UI improvements
     { 'stevearc/dressing.nvim',        config = true }, {
     'rcarriga/nvim-notify',

nvim/.config/nvim/spell/en.utf-8.add

@@ -181,5 +181,3 @@ positivity
 dataset
 endogeneity
 outliers
-GitLab
-Gitea

writing/.config/jrnl/jrnl.yaml

@@ -16,4 +16,4 @@ linewrap: 79
 tagsymbols: '#@'
 template: false
 timeformat: '%F %r'
-version: v4.0
+version: v3.3