writing: Replace zathura with sioyek
Replaced or extended all default references to zathura with sioyek so it will automatically take on any tasks meant for pdf reading. With the current configuration, hardly a change should be noticed.
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[bibtex](https://en.wikipedia.org/wiki/BibTeX) - plain-text reference management
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[zathura](git.pwmt.org) - keyboard-driven PDF reading
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[sioyek](http://sioyek.info/) - keyboard-driven PDF reading *and annotating*
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This readme is a little out of date, as are the scripts below.
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They are old, I used them during my time as a student and they are probably written terribly.
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