62 lines
1.6 KiB
TOML
62 lines
1.6 KiB
TOML
[tool.poetry]
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name = "scoping-review"
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version = "0.5.1"
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description = ""
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authors = ["Marty Oehme <marty.oehme@gmail.com>"]
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packages = [{ include = "src" }]
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[tool.poetry.dependencies]
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python = "<3.13,>=3.11"
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pandas = "^2.1.1"
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seaborn = "^0.13.0"
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bibtexparser = { version = ">=2.0.0b1", allow-prereleases = true }
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jupyter = "^1.0.0"
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jupyter-cache = "^0.6.1"
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tabulate = "^0.9.0"
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openpyxl = "^3.1.2"
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[tool.poetry.group.dev.dependencies]
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pynvim = "^0.5.0"
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pyperclip = "^1.8.2"
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poethepoet = "^0.24.4"
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[build-system]
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requires = ["poetry-core"]
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build-backend = "poetry.core.masonry.api"
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[tool.ruff]
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ignore = ["E402"]
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[tool.pyright]
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typeCheckingMode="basic"
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[tool.poe]
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poetry_command = ""
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[tool.poe.tasks.preview]
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help = "Preview the main review in the browser"
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cmd = "quarto preview manuscript/article.qmd --to=html"
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[tool.poe.tasks.render]
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help = "Render all project files"
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cmd = "quarto render"
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[tool.poe.tasks.edit]
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help = "Edit the main project file in-environment"
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cmd = "nvim"
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[tool.poe.tasks.extract]
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help = "Extract the csv data from raw yaml files"
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shell = """
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python src/extract/raw_to_extracted_csv.py > data/processed/extracted.csv
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"""
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[tool.poe.tasks.prisma]
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help = "Update PRISMA flowchart numbers"
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shell = """
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python src/model/prisma.py > data/processed/prisma.mmd
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"""
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[tool.poe.tasks.milestone]
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help = "Extract, render, commit and version a finished artifact"
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shell = """
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quarto render --output-dir 05-final_paper
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VERSION="$(poetry version -s minor)"
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git add pyproject.toml data 05-final_paper
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git commit -m "Publish version $VERSION" --no-gpg-sign
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git tag -a -m "new bundle for $(date -Isecond)" "$VERSION"
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"""
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