chore(script): Include superseded in duplicate count
Included studies marked as 'out::superseded' in the duplication removal step.
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1 changed files with 2 additions and 1 deletions
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@ -429,6 +429,7 @@ nr_out_duplicates = FULL_RAW_SAMPLE_NOTHING_REMOVED - len(bib_sample.entries)
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nr_other_sources = (len(bib_sample.entries) + nr_out_duplicates) - nr_database_query_raw
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all_keywords = [entry["keywords"] for entry in bib_sample.entries if "keywords" in entry.fields_dict.keys()]
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nr_out_superseded = len([1 for kw in all_keywords if "out::superseded" in kw])
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nr_out_title = len([1 for kw in all_keywords if "out::title" in kw])
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nr_out_abstract = len([1 for kw in all_keywords if "out::abstract" in kw])
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nr_out_fulltext = len([1 for kw in all_keywords if "out::full-text" in kw])
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@ -447,7 +448,7 @@ flowchart TD;
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search_db["Records identified through database searching (n={nr_database_query_raw})"] --> starting_sample;
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search_prev["Records identified through other sources (n={nr_other_sources})"] --> starting_sample["Starting sample (n={FULL_RAW_SAMPLE_NOTHING_REMOVED})"];
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starting_sample -- "Duplicate removal ({nr_out_duplicates} removed) "--> dedup["Records after duplicates removed (n={len(bib_sample.entries)})"];
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starting_sample -- "Duplicate removal ({nr_out_duplicates+nr_out_superseded} removed) "--> dedup["Records after duplicates removed (n={len(bib_sample.entries)})"];
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dedup -- "Title screening ({nr_out_title} excluded)" --> title_screened["Records after titles screened (n={len(bib_sample.entries) - nr_out_title})"];
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