fix(code): Fix live zotero gen with quarto 1.4
Quarto 1.4 does not like a bare 'zotero' metadata frontmatter key with sub keys for the filter options. This commit updates the zotero-live citations filter plugin by retorque and changes its configuration so it takes settings either through the 'zotero' key or, if that one is not found, through the 'zoterolive' key. Same options.
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EDBF2ED917B2EF6A
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@ -8,7 +8,7 @@ project:
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- scoping_review.qmd
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toc: true
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format:
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format:
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html:
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code-fold: true
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code-tools: true
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@ -26,3 +26,10 @@ format:
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echo: false
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number-sections: true
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pdf-engine: tectonic
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bibliography: 02-data/intermediate/zotero-library.bib
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csl: /home/marty/documents/library/utilities/styles/APA-7.csl
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zoterolive:
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library: wow-inequalities
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client: zotero
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csl-style: apa
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@ -1,6 +1,4 @@
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---
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bibliography: 02-data/intermediate/zotero-library.bib
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csl: /home/marty/documents/library/utilities/styles/APA-7.csl
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papersize: A4
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linestretch: 1.5
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fontfamily: lmodern
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@ -14,11 +12,7 @@ lang: en
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title: Addressing Inequalities in the World of Work
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subtitle: Scoping Review on 'What Works'
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filters:
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- src/pandoc-to-zotero-live.lua
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zotero:
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library: wow-inequalities
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client: zotero
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csl-style: apa
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- src/pandoc-to-zotero-live.lua
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---
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```{python}
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@ -1,8 +1,8 @@
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local pandoc = require("pandoc")
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print("zotero-live-citations caf41cc")
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print("zotero-live-citations cd1ef3f")
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local mt, latest = pandoc.mediabag.fetch("https://retorque.re/zotero-better-bibtex/exporting/zotero.lua.revision")
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latest = string.sub(latest, 1, 10)
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if "caf41cc" ~= latest then
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if "cd1ef3f" ~= latest then
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print('new version "' .. latest .. '" available at https://retorque.re/zotero-better-bibtex/exporting')
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end
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@ -1946,6 +1946,21 @@ do
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return copy
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end
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function module.dump(o)
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if type(o) == "table" then
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local s = "{ "
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for k, v in pairs(o) do
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if type(k) ~= "number" then
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k = '"' .. k .. '"'
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end
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s = s .. "[" .. k .. "] = " .. module.dump(v) .. ","
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end
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return s .. "} "
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else
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return tostring(o)
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end
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end
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function module.trim(s)
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if s == nil then
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return s
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@ -1973,42 +1988,6 @@ do
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module.citekeys = {}
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function module.authors(csl_or_item)
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local authors = {}
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local author
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if csl_or_item.author ~= nil then
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for _, author in ipairs(csl_or_item.author) do
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if author.literal ~= nil then
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table.insert(authors, author.literal)
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elseif author.family ~= nil then
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table.insert(authors, author.family)
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end
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end
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elseif csl_or_item.creators ~= nil then
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for _, author in ipairs(csl_or_item.creators) do
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if author.name ~= nil then
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table.insert(authors, author.name)
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elseif author.lastName ~= nil then
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table.insert(authors, author.lastName)
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end
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end
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elseif csl_or_item.reporter ~= nil then
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table.insert(authors, csl_or_item.reporter)
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end
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if utils.tablelength(authors) == 0 then
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return nil
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end
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local last = table.remove(authors)
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if utils.tablelength(authors) == 0 then
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return last
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end
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authors = table.concat(authors, ", ")
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return table.concat({ authors, last }, " and ")
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end
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local function load_items()
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if state.fetched ~= nil then
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return
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@ -2028,15 +2007,19 @@ do
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return
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end
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citekeys = table.concat(citekeys, ",")
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local url = module.url .. utils.urlencode(citekeys)
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local mt, contents = pandoc.mediabag.fetch(url, ".")
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local ok, fetched = pcall(json.decode, contents)
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module.request.params.citekeys = citekeys
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local url = module.url .. utils.urlencode(json.encode(module.request))
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local mt, body = pandoc.mediabag.fetch(url, ".")
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local ok, response = pcall(json.decode, body)
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if not ok then
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print("could not fetch Zotero items: " .. contents)
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print("could not fetch Zotero items: " .. response .. "(" .. body .. ")")
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return
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end
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state.fetched = fetched
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if response.error ~= nil then
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print("could not fetch Zotero items: " .. response.error.message)
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return
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end
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state.fetched = response.result
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end
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function module.get(citekey)
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@ -2048,7 +2031,11 @@ do
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if state.fetched.errors[citekey] ~= nil then
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state.reported[citekey] = true
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print("@" .. citekey .. ": " .. state.fetched.errors[citekey])
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if state.fetched.errors[citekey] == 0 then
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print("@" .. citekey .. ": not found")
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else
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print("@" .. citekey .. ": duplicates found")
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end
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return nil
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end
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@ -2058,7 +2045,7 @@ do
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return nil
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end
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return state.fetched.items[citekey], state.fetched.zotero[citekey]
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return state.fetched.items[citekey]
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end
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return module
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@ -2103,12 +2090,13 @@ local zotero = require("zotero")
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local config = {
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client = "zotero",
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scannable_cite = false,
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csl_style = "apa7",
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csl_style = "apa",
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format = nil, -- more to document than anything else -- Lua does not store nils in tables
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transferable = false,
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sorted = true,
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}
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-- -- -- bibliography marker generator -- -- --
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-- -- bibliography marker generator -- --
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function zotero_docpreferences_odt(csl_style)
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return string.format(
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'<data data-version="3" zotero-version="5.0.89">'
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@ -2180,12 +2168,23 @@ local function zotero_bibl_odt()
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)
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end
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-- -- -- citation market generators -- -- --
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-- -- -- citation marker generators -- -- --
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function clean_csl(item)
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local cleaned = {}
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for k, v in pairs(item) do
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cleaned[k] = v
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end
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cleaned.custom = nil
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return setmetatable(cleaned, getmetatable(item))
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end
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local function zotero_ref(cite)
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local content = pandoc.utils.stringify(cite.content)
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local csl = {
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citationID = utils.next_id(8),
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properties = {
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unsorted = not config.sorted,
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formattedCitation = content,
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plainCitation = nil, -- otherwise we get a barrage of "you have edited this citation" popups
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-- dontUpdate = false,
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@ -2198,24 +2197,27 @@ local function zotero_ref(cite)
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notfound = false
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for k, item in pairs(cite.citations) do
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local itemData, zoteroData = zotero.get(item.id)
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local itemData = zotero.get(item.id)
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if itemData == nil then
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notfound = true
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else
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local citation = {
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id = zoteroData.itemID,
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uris = { zoteroData.uri },
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id = itemData.custom.itemID,
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uris = { itemData.custom.uri },
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-- uri = { zoteroData.uri },
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itemData = itemData,
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itemData = clean_csl(itemData),
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}
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if item.mode == "AuthorInText" then -- not formally supported in Zotero
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if config.author_in_text then
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local authors = zotero.authors(itemData)
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if authors == nil then
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local authors = itemData.custom.author
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if authors == nil or authors == "" then
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return cite
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else
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author_in_text = pandoc.utils.stringify(pandoc.Str(authors)) .. " "
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author_in_text = '<w:r><w:t xml:space="preserve">'
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.. utils.xmlescape(author_in_text)
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.. "</w:t></w:r>"
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citation["suppress-author"] = true
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end
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else
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@ -2258,7 +2260,7 @@ local function zotero_ref(cite)
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field = field .. '</w:t></w:r><w:r><w:fldChar w:fldCharType="end"/></w:r>'
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return pandoc.RawInline("openxml", field)
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elseif config.format == "odt" then
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else
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if config.transferable then
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local field = author_in_text
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.. '<text:a xlink:type="simple" xlink:href="https://www.zotero.org/" text:style-name="Internet_20_link">'
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@ -2380,7 +2382,8 @@ end
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function Meta(meta)
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-- create meta.zotero if it does not exist
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if not meta.zotero then
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meta.zotero = {}
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-- ADDED FOR QUARTO 1.4 COMPATIBILITY
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meta.zotero = meta.zoterolive or {}
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end
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-- copy meta.zotero_<key>, which are likely command line params and take precedence, over to meta.zotero
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@ -2401,6 +2404,9 @@ function Meta(meta)
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if meta.zotero["csl-style"] ~= nil then
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config.csl_style = pandoc.utils.stringify(meta.zotero["csl-style"])
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if config.csl_style == "apa7" then
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config.csl_style = "apa"
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end
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end
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config.transferable = test_boolean("transferable", meta.zotero["transferable"])
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@ -2421,26 +2427,31 @@ function Meta(meta)
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config.client = meta.zotero.client
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if config.client == "zotero" then
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zotero.url = "http://127.0.0.1:23119/better-bibtex/export/item?pandocFilterData=true"
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zotero.url = "http://127.0.0.1:23119/better-bibtex/json-rpc?"
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elseif config.client == "jurism" then
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zotero.url = "http://127.0.0.1:24119/better-bibtex/export/item?pandocFilterData=true"
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zotero.url = "http://127.0.0.1:24119/better-bibtex/json-rpc?"
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end
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zotero.request = {
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jsonrpc = "2.0",
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method = "item.pandoc_filter",
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params = {
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style = config.csl_style or "apa",
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},
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}
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if string.match(FORMAT, "odt") and config.scannable_cite then
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-- scannable-cite takes precedence over csl-style
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config.format = "scannable-cite"
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zotero.url = zotero.url .. "&translator=jzon"
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zotero.request.params.asCSL = false
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elseif string.match(FORMAT, "odt") or string.match(FORMAT, "docx") then
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config.format = FORMAT
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zotero.url = zotero.url .. "&translator=json"
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zotero.request.params.asCSL = true
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end
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if type(meta.zotero.library) ~= "nil" then
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zotero.url = zotero.url .. "&library=" .. utils.urlencode(meta.zotero.library)
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zotero.request.params.libraryID = meta.zotero.library
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end
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zotero.url = zotero.url .. "&citationKeys="
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if config.format == "odt" and config.csl_style then
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-- These will be added to the document metadata by pandoc automatically
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meta.ZOTERO_PREF_1 = zotero_docpreferences_odt(config.csl_style)
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