fix(code): Fix live zotero gen with quarto 1.4
Quarto 1.4 does not like a bare 'zotero' metadata frontmatter key with sub keys for the filter options. This commit updates the zotero-live citations filter plugin by retorque and changes its configuration so it takes settings either through the 'zotero' key or, if that one is not found, through the 'zoterolive' key. Same options.
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3 changed files with 84 additions and 72 deletions
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@ -8,7 +8,7 @@ project:
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- scoping_review.qmd
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toc: true
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format:
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format:
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html:
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code-fold: true
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code-tools: true
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@ -26,3 +26,10 @@ format:
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echo: false
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number-sections: true
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pdf-engine: tectonic
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bibliography: 02-data/intermediate/zotero-library.bib
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csl: /home/marty/documents/library/utilities/styles/APA-7.csl
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zoterolive:
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library: wow-inequalities
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client: zotero
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csl-style: apa
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@ -1,6 +1,4 @@
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---
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bibliography: 02-data/intermediate/zotero-library.bib
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csl: /home/marty/documents/library/utilities/styles/APA-7.csl
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papersize: A4
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linestretch: 1.5
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fontfamily: lmodern
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@ -14,11 +12,7 @@ lang: en
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title: Addressing Inequalities in the World of Work
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subtitle: Scoping Review on 'What Works'
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filters:
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- src/pandoc-to-zotero-live.lua
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zotero:
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library: wow-inequalities
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client: zotero
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csl-style: apa
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- src/pandoc-to-zotero-live.lua
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---
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```{python}
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@ -1,8 +1,8 @@
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local pandoc = require("pandoc")
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print("zotero-live-citations caf41cc")
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print("zotero-live-citations cd1ef3f")
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local mt, latest = pandoc.mediabag.fetch("https://retorque.re/zotero-better-bibtex/exporting/zotero.lua.revision")
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latest = string.sub(latest, 1, 10)
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if "caf41cc" ~= latest then
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if "cd1ef3f" ~= latest then
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print('new version "' .. latest .. '" available at https://retorque.re/zotero-better-bibtex/exporting')
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end
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@ -1946,6 +1946,21 @@ do
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return copy
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end
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function module.dump(o)
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if type(o) == "table" then
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local s = "{ "
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for k, v in pairs(o) do
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if type(k) ~= "number" then
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k = '"' .. k .. '"'
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end
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s = s .. "[" .. k .. "] = " .. module.dump(v) .. ","
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end
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return s .. "} "
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else
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return tostring(o)
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end
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end
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function module.trim(s)
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if s == nil then
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return s
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@ -1973,42 +1988,6 @@ do
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module.citekeys = {}
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function module.authors(csl_or_item)
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local authors = {}
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local author
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if csl_or_item.author ~= nil then
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for _, author in ipairs(csl_or_item.author) do
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if author.literal ~= nil then
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table.insert(authors, author.literal)
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elseif author.family ~= nil then
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table.insert(authors, author.family)
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end
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end
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elseif csl_or_item.creators ~= nil then
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for _, author in ipairs(csl_or_item.creators) do
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if author.name ~= nil then
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table.insert(authors, author.name)
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elseif author.lastName ~= nil then
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table.insert(authors, author.lastName)
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end
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end
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elseif csl_or_item.reporter ~= nil then
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table.insert(authors, csl_or_item.reporter)
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end
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if utils.tablelength(authors) == 0 then
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return nil
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end
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local last = table.remove(authors)
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if utils.tablelength(authors) == 0 then
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return last
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end
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authors = table.concat(authors, ", ")
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return table.concat({ authors, last }, " and ")
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end
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local function load_items()
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if state.fetched ~= nil then
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return
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@ -2028,15 +2007,19 @@ do
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return
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end
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citekeys = table.concat(citekeys, ",")
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local url = module.url .. utils.urlencode(citekeys)
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local mt, contents = pandoc.mediabag.fetch(url, ".")
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local ok, fetched = pcall(json.decode, contents)
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module.request.params.citekeys = citekeys
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local url = module.url .. utils.urlencode(json.encode(module.request))
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local mt, body = pandoc.mediabag.fetch(url, ".")
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local ok, response = pcall(json.decode, body)
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if not ok then
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print("could not fetch Zotero items: " .. contents)
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print("could not fetch Zotero items: " .. response .. "(" .. body .. ")")
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return
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end
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state.fetched = fetched
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if response.error ~= nil then
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print("could not fetch Zotero items: " .. response.error.message)
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return
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end
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state.fetched = response.result
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end
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function module.get(citekey)
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@ -2048,7 +2031,11 @@ do
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if state.fetched.errors[citekey] ~= nil then
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state.reported[citekey] = true
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print("@" .. citekey .. ": " .. state.fetched.errors[citekey])
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if state.fetched.errors[citekey] == 0 then
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print("@" .. citekey .. ": not found")
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else
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print("@" .. citekey .. ": duplicates found")
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end
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return nil
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end
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@ -2058,7 +2045,7 @@ do
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return nil
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end
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return state.fetched.items[citekey], state.fetched.zotero[citekey]
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return state.fetched.items[citekey]
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end
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return module
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@ -2103,12 +2090,13 @@ local zotero = require("zotero")
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local config = {
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client = "zotero",
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scannable_cite = false,
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csl_style = "apa7",
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csl_style = "apa",
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format = nil, -- more to document than anything else -- Lua does not store nils in tables
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transferable = false,
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sorted = true,
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}
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-- -- -- bibliography marker generator -- -- --
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-- -- bibliography marker generator -- --
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function zotero_docpreferences_odt(csl_style)
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return string.format(
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'<data data-version="3" zotero-version="5.0.89">'
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@ -2180,12 +2168,23 @@ local function zotero_bibl_odt()
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)
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end
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-- -- -- citation market generators -- -- --
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-- -- -- citation marker generators -- -- --
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function clean_csl(item)
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local cleaned = {}
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for k, v in pairs(item) do
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cleaned[k] = v
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end
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cleaned.custom = nil
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return setmetatable(cleaned, getmetatable(item))
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end
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local function zotero_ref(cite)
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local content = pandoc.utils.stringify(cite.content)
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local csl = {
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citationID = utils.next_id(8),
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properties = {
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unsorted = not config.sorted,
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formattedCitation = content,
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plainCitation = nil, -- otherwise we get a barrage of "you have edited this citation" popups
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-- dontUpdate = false,
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@ -2198,24 +2197,27 @@ local function zotero_ref(cite)
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notfound = false
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for k, item in pairs(cite.citations) do
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local itemData, zoteroData = zotero.get(item.id)
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local itemData = zotero.get(item.id)
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if itemData == nil then
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notfound = true
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else
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local citation = {
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id = zoteroData.itemID,
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uris = { zoteroData.uri },
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id = itemData.custom.itemID,
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uris = { itemData.custom.uri },
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-- uri = { zoteroData.uri },
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itemData = itemData,
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itemData = clean_csl(itemData),
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}
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if item.mode == "AuthorInText" then -- not formally supported in Zotero
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if config.author_in_text then
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local authors = zotero.authors(itemData)
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if authors == nil then
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local authors = itemData.custom.author
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if authors == nil or authors == "" then
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return cite
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else
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author_in_text = pandoc.utils.stringify(pandoc.Str(authors)) .. " "
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author_in_text = '<w:r><w:t xml:space="preserve">'
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.. utils.xmlescape(author_in_text)
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.. "</w:t></w:r>"
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citation["suppress-author"] = true
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end
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else
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@ -2258,7 +2260,7 @@ local function zotero_ref(cite)
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field = field .. '</w:t></w:r><w:r><w:fldChar w:fldCharType="end"/></w:r>'
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return pandoc.RawInline("openxml", field)
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elseif config.format == "odt" then
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else
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if config.transferable then
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local field = author_in_text
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.. '<text:a xlink:type="simple" xlink:href="https://www.zotero.org/" text:style-name="Internet_20_link">'
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@ -2380,7 +2382,8 @@ end
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function Meta(meta)
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-- create meta.zotero if it does not exist
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if not meta.zotero then
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meta.zotero = {}
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-- ADDED FOR QUARTO 1.4 COMPATIBILITY
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meta.zotero = meta.zoterolive or {}
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end
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-- copy meta.zotero_<key>, which are likely command line params and take precedence, over to meta.zotero
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@ -2401,6 +2404,9 @@ function Meta(meta)
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if meta.zotero["csl-style"] ~= nil then
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config.csl_style = pandoc.utils.stringify(meta.zotero["csl-style"])
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if config.csl_style == "apa7" then
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config.csl_style = "apa"
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end
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end
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config.transferable = test_boolean("transferable", meta.zotero["transferable"])
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@ -2421,26 +2427,31 @@ function Meta(meta)
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config.client = meta.zotero.client
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if config.client == "zotero" then
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zotero.url = "http://127.0.0.1:23119/better-bibtex/export/item?pandocFilterData=true"
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zotero.url = "http://127.0.0.1:23119/better-bibtex/json-rpc?"
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elseif config.client == "jurism" then
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zotero.url = "http://127.0.0.1:24119/better-bibtex/export/item?pandocFilterData=true"
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zotero.url = "http://127.0.0.1:24119/better-bibtex/json-rpc?"
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end
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zotero.request = {
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jsonrpc = "2.0",
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method = "item.pandoc_filter",
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params = {
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style = config.csl_style or "apa",
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},
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}
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if string.match(FORMAT, "odt") and config.scannable_cite then
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-- scannable-cite takes precedence over csl-style
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config.format = "scannable-cite"
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zotero.url = zotero.url .. "&translator=jzon"
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zotero.request.params.asCSL = false
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elseif string.match(FORMAT, "odt") or string.match(FORMAT, "docx") then
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config.format = FORMAT
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zotero.url = zotero.url .. "&translator=json"
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zotero.request.params.asCSL = true
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end
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if type(meta.zotero.library) ~= "nil" then
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zotero.url = zotero.url .. "&library=" .. utils.urlencode(meta.zotero.library)
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zotero.request.params.libraryID = meta.zotero.library
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end
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zotero.url = zotero.url .. "&citationKeys="
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if config.format == "odt" and config.csl_style then
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-- These will be added to the document metadata by pandoc automatically
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meta.ZOTERO_PREF_1 = zotero_docpreferences_odt(config.csl_style)
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