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27
papis_extract/__init__.py
View file

@ -1,4 +1,3 @@
import re
import click import click
import papis.cli import papis.cli
import papis.config import papis.config
@ -8,16 +7,16 @@ import papis.notes
import papis.strings import papis.strings
from papis.document import Document from papis.document import Document
from papis_extract import extraction
from papis_extract.annotation import Annotation from papis_extract.annotation import Annotation
from papis_extract import extraction
from papis_extract.exporter import Exporter from papis_extract.exporter import Exporter
from papis_extract.exporters import all_exporters
from papis_extract.extractors import all_extractors from papis_extract.extractors import all_extractors
from papis_extract.exporters import all_exporters
from papis_extract.formatter import Formatter, formatters from papis_extract.formatter import Formatter, formatters
logger = papis.logging.get_logger(__name__) logger = papis.logging.get_logger(__name__)
DEFAULT_OPTIONS: dict[str, dict[str, bool | float | dict[str, str]]] = { DEFAULT_OPTIONS = {
"plugins.extract": { "plugins.extract": {
"tags": {}, "tags": {},
"on_import": False, "on_import": False,
@ -89,11 +88,10 @@ def main(
git: bool, git: bool,
force: bool, force: bool,
) -> None: ) -> None:
"""Extract annotations from any documents. """Extract annotations from any pdf document.
The extract plugin allows manual or automatic extraction of all annotations The extract plugin allows manual or automatic extraction of all annotations
contained in the documents belonging to entries of the papis library, contained in the pdf documents belonging to entries of the papis library.
primarily targeting PDF documents currently.
It can write those changes to stdout or directly create and update notes It can write those changes to stdout or directly create and update notes
for papis documents. for papis documents.
@ -130,34 +128,25 @@ def run(
git: bool = False, git: bool = False,
force: bool = False, force: bool = False,
) -> None: ) -> None:
exporter: Exporter
if write: if write:
exporter = all_exporters["notes"]( exporter: Exporter = all_exporters["notes"](
formatter=formatter or formatters["markdown-atx"], formatter=formatter or formatters["markdown-atx"],
edit=edit, edit=edit,
git=git, git=git,
force=force, force=force,
) )
else: else:
exporter = all_exporters["stdout"]( exporter: Exporter = all_exporters["stdout"](
formatter=formatter or formatters["markdown"] formatter=formatter or formatters["markdown"]
) )
doc_annots: list[tuple[Document, list[Annotation]]] = [] doc_annots: list[tuple[Document, list[Annotation]]] = []
for doc in documents: for doc in documents:
annotations: list[Annotation] = [] annotations: list[Annotation] = []
valid_files: int = 0
for ext in extractors: for ext in extractors:
if not ext: if not ext:
continue continue
added = extraction.start(ext, doc) annotations.extend(extraction.start(ext, doc))
if added is not None:
valid_files += 1
annotations.extend(added)
doc_annots.append((doc, annotations)) doc_annots.append((doc, annotations))
if valid_files == 0:
# have to remove curlys or papis logger gets upset
desc = re.sub("[{}]", "", papis.document.describe(doc))
logger.info(f"Document {desc} has no valid extractors for any of its files.")
exporter.run(doc_annots) exporter.run(doc_annots)

6
papis_extract/annotation.py
View file

@ -1,6 +1,6 @@
import math import math
from dataclasses import dataclass from dataclasses import dataclass
from typing import Any, Optional, cast from typing import Any, Optional
import chevron import chevron
import papis.config import papis.config
@ -127,7 +127,7 @@ class Annotation:
""" """
rawvalue: Any = papis.config.general_get(key, section=section) rawvalue: Any = papis.config.general_get(key, section=section)
if isinstance(rawvalue, dict): if isinstance(rawvalue, dict):
return cast(dict[str, str], rawvalue) return rawvalue
try: try:
rawvalue = eval(rawvalue) rawvalue = eval(rawvalue)
except Exception: except Exception:
@ -142,4 +142,4 @@ class Annotation:
) )
) )
return cast(dict[str, str], rawvalue) return rawvalue

8
papis_extract/exceptions.py
View file

@ -1,8 +0,0 @@
class ExtractionError(Exception):
"""Raised for exceptions during extraction.
Something went wrong during the extraction process in the extractor
run routine itself.
"""
pass

3
papis_extract/exporter.py
View file

@ -24,4 +24,5 @@ class Exporter(Protocol):
def run( def run(
self, annot_docs: list[tuple[papis.document.Document, list[Annotation]]] self, annot_docs: list[tuple[papis.document.Document, list[Annotation]]]
) -> None: ... ) -> None:
...

1
papis_extract/exporters/__init__.py
View file

@ -1,3 +1,4 @@
import papis.logging import papis.logging
from papis_extract.exporter import Exporter from papis_extract.exporter import Exporter

9
papis_extract/exporters/notes.py
View file

@ -28,10 +28,7 @@ class NotesExporter:
documents missing a note field or appends to existing. documents missing a note field or appends to existing.
""" """
for doc, annots in annot_docs: for doc, annots in annot_docs:
# first always true since we write single doc per note formatted_annotations = self.formatter(doc, annots).split("\n")
formatted_annotations: list[str] = self.formatter(
doc, annots, first=True
).split("\n")
if formatted_annotations: if formatted_annotations:
self._add_annots_to_note(doc, formatted_annotations, force=self.force) self._add_annots_to_note(doc, formatted_annotations, force=self.force)
@ -83,9 +80,7 @@ class NotesExporter:
# add newline if theres no empty space at file end # add newline if theres no empty space at file end
if len(existing) > 0 and existing[-1].strip() != "": if len(existing) > 0 and existing[-1].strip() != "":
f.write("\n") f.write("\n")
# FIXME this either joins them too close or moves them too far apart f.write("\n\n".join(new_annotations))
# We need a better algorithm which knows what a full 'annotation' is.
f.write("\n".join(new_annotations))
f.write("\n") f.write("\n")
logger.info( logger.info(
f"Wrote {len(new_annotations)} " f"Wrote {len(new_annotations)} "

4
papis_extract/exporters/stdout.py
View file

@ -20,9 +20,7 @@ class StdoutExporter:
the annotations in somewhat of a list form. the annotations in somewhat of a list form.
Not intended for machine-readability. Not intended for machine-readability.
""" """
first_entry = True
for doc, annots in annot_docs: for doc, annots in annot_docs:
output: str = self.formatter(doc, annots, first=first_entry) output: str = self.formatter(doc, annots)
if output: if output:
print("{output}\n".format(output=output.rstrip("\n"))) print("{output}\n".format(output=output.rstrip("\n")))
first_entry = False

22
papis_extract/extraction.py
View file

@ -2,33 +2,33 @@ import re
from pathlib import Path from pathlib import Path
from typing import Protocol from typing import Protocol
import fitz
import papis.config import papis.config
import papis.document import papis.document
import papis.logging import papis.logging
from papis.document import Document from papis.document import Document
from papis_extract.annotation import Annotation from papis_extract.annotation import Annotation
from papis_extract.exceptions import ExtractionError
logger = papis.logging.get_logger(__name__) logger = papis.logging.get_logger(__name__)
class Extractor(Protocol): class Extractor(Protocol):
def can_process(self, filename: Path) -> bool: ... def can_process(self, filename: Path) -> bool:
...
def run(self, filename: Path) -> list[Annotation]: ... def run(self, filename: Path) -> list[Annotation]:
...
def start( def start(
extractor: Extractor, extractor: Extractor,
document: Document, document: Document,
) -> list[Annotation] | None: ) -> list[Annotation]:
"""Extract all annotations from passed documents. """Extract all annotations from passed documents.
Returns all annotations contained in the papis Returns all annotations contained in the papis
documents passed in (empty list if no annotations). documents passed in.
If there are no files that the extractor can process,
returns None instead.
""" """
annotations: list[Annotation] = [] annotations: list[Annotation] = []
file_available: bool = False file_available: bool = False
@ -41,10 +41,12 @@ def start(
try: try:
annotations.extend(extractor.run(fname)) annotations.extend(extractor.run(fname))
except ExtractionError as e: except fitz.FileDataError as e:
logger.error(f"File extraction errors for {file}. File may be damaged.\n{e}") print(f"File structure errors for {file}.\n{e}")
if not file_available: if not file_available:
return None # have to remove curlys or papis logger gets upset
desc = re.sub("[{}]", "", papis.document.describe(document))
logger.info(f"No {type(extractor)} file for document: {desc}")
return annotations return annotations

73
papis_extract/extractors/pdf.py
View file

@ -1,15 +1,12 @@
# pyright: strict, reportMissingTypeStubs=false, reportUnknownMemberType=false
from pathlib import Path from pathlib import Path
from typing import cast
import fitz
import Levenshtein import Levenshtein
import magic import magic
import papis.config import papis.config
import papis.logging import papis.logging
import pymupdf as mu
from papis_extract.annotation import Annotation from papis_extract.annotation import Annotation
from papis_extract.exceptions import ExtractionError
logger = papis.logging.get_logger(__name__) logger = papis.logging.get_logger(__name__)
@ -29,45 +26,31 @@ class PdfExtractor:
Returns all readable annotations contained in the file Returns all readable annotations contained in the file
passed in. Only returns Highlight or Text annotations. passed in. Only returns Highlight or Text annotations.
""" """
annotations: list[Annotation] = [] annotations = []
try: with fitz.Document(filename) as doc:
with mu.Document(filename) as doc: for page in doc:
for ( for annot in page.annots():
page quote, note = self._retrieve_annotation_content(page, annot)
) in doc: # pyright: ignore [reportUnknownVariableType] - missing stub if not quote and not note:
page = cast(mu.Page, page) continue
annot: mu.Annot col = (
for annot in page.annots(): annot.colors.get("fill")
quote, note = self._retrieve_annotation_content(page, annot) or annot.colors.get("stroke")
if not quote and not note: or (0.0, 0.0, 0.0)
continue )
color: tuple[float, float, float] = cast( a = Annotation(
tuple[float, float, float], file=str(filename),
( content=quote or "",
annot.colors.get("fill") note=note or "",
or annot.colors.get("stroke") color=col,
or (0.0, 0.0, 0.0) type=annot.type[1],
), page=(page.number or 0) + 1,
) )
page_nr: int = cast(int, page.number or 0) annotations.append(a)
highlight_type: str = cast(str, annot.type[1] or "") logger.debug(
a = Annotation( f"Found {len(annotations)} "
file=str(filename), f"{'annotation' if len(annotations) == 1 else 'annotations'} for {filename}."
content=quote or "", )
note=note or "",
color=color,
type=highlight_type,
page=page_nr,
)
annotations.append(a)
logger.debug(
f"Found {len(annotations)} "
f"{'annotation' if len(annotations) == 1 else 'annotations'} for {filename}."
)
except mu.FileDataError:
raise ExtractionError
return annotations return annotations
def _is_pdf(self, fname: Path) -> bool: def _is_pdf(self, fname: Path) -> bool:
@ -75,7 +58,7 @@ class PdfExtractor:
return magic.from_file(fname, mime=True) == "application/pdf" return magic.from_file(fname, mime=True) == "application/pdf"
def _retrieve_annotation_content( def _retrieve_annotation_content(
self, page: mu.Page, annotation: mu.Annot self, page: fitz.Page, annotation: fitz.Annot
) -> tuple[str | None, str | None]: ) -> tuple[str | None, str | None]:
"""Gets the text content of an annotation. """Gets the text content of an annotation.
@ -86,7 +69,7 @@ class PdfExtractor:
should both be included or are the same, using should both be included or are the same, using
Levenshtein distance. Levenshtein distance.
""" """
content = cast(str, annotation.info["content"].replace("\n", " ")) content = annotation.info["content"].replace("\n", " ")
written = page.get_textbox(annotation.rect).replace("\n", " ") written = page.get_textbox(annotation.rect).replace("\n", " ")
# highlight with selection in note # highlight with selection in note

22
papis_extract/extractors/pocketbook.py
View file

@ -1,4 +1,3 @@
# pyright: strict, reportUnknownMemberType=false
from pathlib import Path from pathlib import Path
import magic import magic
@ -43,18 +42,9 @@ class PocketBookExtractor:
annotations: list[Annotation] = [] annotations: list[Annotation] = []
for bm in html.select("div.bookmark"): for bm in html.select("div.bookmark"):
content = str( content = (bm.select_one("div.bm-text>p") or html.new_string("")).text
(bm.select_one("div.bm-text>p") or html.new_string("")).text note = (bm.select_one("div.bm-note>p") or html.new_string("")).text
or "" # pyright: ignore [reportUnknownArgumentType] page = (bm.select_one("p.bm-page") or html.new_string("")).text
)
note = str(
(bm.select_one("div.bm-note>p") or html.new_string("")).text
or "" # pyright: ignore [reportUnknownArgumentType]
)
page = int(
(bm.select_one("p.bm-page") or html.new_string("")).text
or 0 # pyright: ignore [reportUnknownArgumentType]
)
el_classes = bm.attrs.get("class", "").split(" ") el_classes = bm.attrs.get("class", "").split(" ")
color = (0, 0, 0) color = (0, 0, 0)
@ -65,11 +55,11 @@ class PocketBookExtractor:
a = Annotation( a = Annotation(
file=str(filename), file=str(filename),
content=content, content=content or "",
note=note, note=note or "",
color=color, color=color,
type="Highlight", type="Highlight",
page=page, page=int(page),
) )
annotations.append(a) annotations.append(a)

41
papis_extract/formatter.py
View file

@ -1,32 +1,15 @@
from typing import Protocol from collections.abc import Callable
from papis.document import Document from papis.document import Document
from papis_extract.annotation import Annotation from papis_extract.annotation import Annotation
Formatter = Callable[[Document, list[Annotation]], str]
class Formatter(Protocol):
"""Basic formatter protocol.
Every valid formatter must implement at least this protocol.
A formatter is a function which receives a document and a list
of annotations and spits them out in some formatted way.
Formatters additionally must take the (often optional) passed
parameter 'first' which signals to the formatter that the current
document entry is the very first one to be printed in whatever
exporter is used, if multiple entries are printed.
This can be useful for adding a header if necessary for the format.
"""
def __call__(
self, document: Document, annotations: list[Annotation], first: bool
) -> str: ...
def format_markdown( def format_markdown(
document: Document = Document(), document: Document = Document(),
annotations: list[Annotation] = [], annotations: list[Annotation] = [],
first: bool = False,
headings: str = "setext", # setext | atx | None headings: str = "setext", # setext | atx | None
) -> str: ) -> str:
if not annotations: if not annotations:
@ -40,13 +23,15 @@ def format_markdown(
heading = f"{document.get('title', '')} - {document.get('author', '')}" heading = f"{document.get('title', '')} - {document.get('author', '')}"
if headings == "atx": if headings == "atx":
output += f"# {heading}\n\n" output = f"# {heading}\n\n"
elif headings == "setext": elif headings == "setext":
title_decoration = ( title_decoration = (
f"{'=' * len(document.get('title', ''))} " f"{'=' * len(document.get('title', ''))} "
f"{'-' * len(document.get('author', ''))}" f"{'-' * len(document.get('author', ''))}"
) )
output += f"{title_decoration}\n{heading}\n{title_decoration}\n\n" output = f"{title_decoration}\n{heading}\n{title_decoration}\n\n"
else:
output = ""
for a in annotations: for a in annotations:
output += a.format(template) output += a.format(template)
@ -60,7 +45,6 @@ def format_markdown(
def format_markdown_atx( def format_markdown_atx(
document: Document = Document(), document: Document = Document(),
annotations: list[Annotation] = [], annotations: list[Annotation] = [],
first: bool = False,
) -> str: ) -> str:
return format_markdown(document, annotations, headings="atx") return format_markdown(document, annotations, headings="atx")
@ -68,7 +52,6 @@ def format_markdown_atx(
def format_markdown_setext( def format_markdown_setext(
document: Document = Document(), document: Document = Document(),
annotations: list[Annotation] = [], annotations: list[Annotation] = [],
first: bool = False,
) -> str: ) -> str:
return format_markdown(document, annotations, headings="setext") return format_markdown(document, annotations, headings="setext")
@ -76,7 +59,6 @@ def format_markdown_setext(
def format_count( def format_count(
document: Document = Document(), document: Document = Document(),
annotations: list[Annotation] = [], annotations: list[Annotation] = [],
first: bool = False,
) -> str: ) -> str:
if not annotations: if not annotations:
return "" return ""
@ -86,24 +68,23 @@ def format_count(
count += 1 count += 1
return ( return (
f"{count} "
f"{document.get('author', '')}" f"{document.get('author', '')}"
f"{': ' if 'author' in document else ''}" # only put separator if author f"{' - ' if 'author' in document else ''}" # only put separator if author
f"{document.get('title', '')}" f"{document.get('title', '')}: "
f"{count}\n"
).rstrip() ).rstrip()
def format_csv( def format_csv(
document: Document = Document(), document: Document = Document(),
annotations: list[Annotation] = [], annotations: list[Annotation] = [],
first: bool = False,
) -> str: ) -> str:
header: str = "type,tag,page,quote,note,author,title,ref,file" header: str = "type,tag,page,quote,note,author,title,ref,file"
template: str = ( template: str = (
'{{type}},{{tag}},{{page}},"{{quote}}","{{note}}",' '{{type}},{{tag}},{{page}},"{{quote}}","{{note}}",'
'"{{doc.author}}","{{doc.title}}","{{doc.ref}}","{{file}}"' '"{{doc.author}}","{{doc.title}}","{{doc.ref}}","{{file}}"'
) )
output = f"{header}\n" if first else "" output = f"{header}\n"
if not annotations: if not annotations:
return "" return ""

692
poetry.lock generated
View file

@ -1,4 +1,4 @@
# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. # This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
[[package]] [[package]]
name = "arxiv2bib" name = "arxiv2bib"
@ -46,13 +46,13 @@ pyparsing = ">=2.0.3"
[[package]] [[package]]
name = "certifi" name = "certifi"
version = "2024.6.2" version = "2023.11.17"
description = "Python package for providing Mozilla's CA Bundle." description = "Python package for providing Mozilla's CA Bundle."
optional = false optional = false
python-versions = ">=3.6" python-versions = ">=3.6"
files = [ files = [
{file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"}, {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"},
{file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"}, {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"},
] ]
[[package]] [[package]]
@ -203,63 +203,63 @@ files = [
[[package]] [[package]]
name = "coverage" name = "coverage"
version = "7.5.3" version = "7.4.0"
description = "Code coverage measurement for Python" description = "Code coverage measurement for Python"
optional = false optional = false
python-versions = ">=3.8" python-versions = ">=3.8"
files = [ files = [
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{file = "coverage-7.5.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:aea7da970f1feccf48be7335f8b2ca64baf9b589d79e05b9397a06696ce1a1ec"}, {file = "coverage-7.4.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0676cd0ba581e514b7f726495ea75aba3eb20899d824636c6f59b0ed2f88c471"},
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all = ["pytest"] all = ["pytest"]
bibtex = ["bibtexparser (>=2.0.0)"]
test = ["pytest"] test = ["pytest"]
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@ -444,171 +443,106 @@ rapidfuzz = ">=3.8.0,<4.0.0"
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{file = "rapidfuzz-3.9.3.tar.gz", hash = "sha256:b398ea66e8ed50451bce5997c430197d5e4b06ac4aa74602717f792d8d8d06e2"},
] ]
[package.extras] [package.extras]
@ -1010,13 +941,13 @@ full = ["numpy"]
[[package]] [[package]]
name = "requests" name = "requests"
version = "2.32.3" version = "2.31.0"
description = "Python HTTP for Humans." description = "Python HTTP for Humans."
optional = false optional = false
python-versions = ">=3.8" python-versions = ">=3.7"
files = [ files = [
{file = "requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"}, {file = "requests-2.31.0-py3-none-any.whl", hash = "sha256:58cd2187c01e70e6e26505bca751777aa9f2ee0b7f4300988b709f44e013003f"},
{file = "requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760"}, {file = "requests-2.31.0.tar.gz", hash = "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"},
] ]
[package.dependencies] [package.dependencies]
@ -1042,13 +973,13 @@ files = [
[[package]] [[package]]
name = "stevedore" name = "stevedore"
version = "5.2.0" version = "5.1.0"
description = "Manage dynamic plugins for Python applications" description = "Manage dynamic plugins for Python applications"
optional = false optional = false
python-versions = ">=3.8" python-versions = ">=3.8"
files = [ files = [
{file = "stevedore-5.2.0-py3-none-any.whl", hash = "sha256:1c15d95766ca0569cad14cb6272d4d31dae66b011a929d7c18219c176ea1b5c9"}, {file = "stevedore-5.1.0-py3-none-any.whl", hash = "sha256:8cc040628f3cea5d7128f2e76cf486b2251a4e543c7b938f58d9a377f6694a2d"},
{file = "stevedore-5.2.0.tar.gz", hash = "sha256:46b93ca40e1114cea93d738a6c1e365396981bb6bb78c27045b7587c9473544d"}, {file = "stevedore-5.1.0.tar.gz", hash = "sha256:a54534acf9b89bc7ed264807013b505bf07f74dbe4bcfa37d32bd063870b087c"},
] ]
[package.dependencies] [package.dependencies]
@ -1067,13 +998,13 @@ files = [
[[package]] [[package]]
name = "tqdm" name = "tqdm"
version = "4.66.4" version = "4.66.1"
description = "Fast, Extensible Progress Meter" description = "Fast, Extensible Progress Meter"
optional = false optional = false
python-versions = ">=3.7" python-versions = ">=3.7"
files = [ files = [
{file = "tqdm-4.66.4-py3-none-any.whl", hash = "sha256:b75ca56b413b030bc3f00af51fd2c1a1a5eac6a0c1cca83cbb37a5c52abce644"}, {file = "tqdm-4.66.1-py3-none-any.whl", hash = "sha256:d302b3c5b53d47bce91fea46679d9c3c6508cf6332229aa1e7d8653723793386"},
{file = "tqdm-4.66.4.tar.gz", hash = "sha256:e4d936c9de8727928f3be6079590e97d9abfe8d39a590be678eb5919ffc186bb"}, {file = "tqdm-4.66.1.tar.gz", hash = "sha256:d88e651f9db8d8551a62556d3cff9e3034274ca5d66e93197cf2490e2dcb69c7"},
] ]
[package.dependencies] [package.dependencies]
@ -1087,29 +1018,28 @@ telegram = ["requests"]
[[package]] [[package]]
name = "typing-extensions" name = "typing-extensions"
version = "4.12.2" version = "4.9.0"
description = "Backported and Experimental Type Hints for Python 3.8+" description = "Backported and Experimental Type Hints for Python 3.8+"
optional = false optional = false
python-versions = ">=3.8" python-versions = ">=3.8"
files = [ files = [
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{file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"}, {file = "typing_extensions-4.9.0.tar.gz", hash = "sha256:23478f88c37f27d76ac8aee6c905017a143b0b1b886c3c9f66bc2fd94f9f5783"},
] ]
[[package]] [[package]]
name = "urllib3" name = "urllib3"
version = "2.2.1" version = "2.1.0"
description = "HTTP library with thread-safe connection pooling, file post, and more." description = "HTTP library with thread-safe connection pooling, file post, and more."
optional = false optional = false
python-versions = ">=3.8" python-versions = ">=3.8"
files = [ files = [
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[package.extras] [package.extras]
brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
h2 = ["h2 (>=4,<5)"]
socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
zstd = ["zstandard (>=0.18.0)"] zstd = ["zstandard (>=0.18.0)"]

3
pyproject.toml
View file

@ -45,6 +45,3 @@ extract = "papis_extract:main"
[build-system] [build-system]
requires = ["poetry-core"] requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api" build-backend = "poetry.core.masonry.api"
[tool.pyright]
typeCheckingMode = "strict"

6
tests/test_annotation.py
View file

@ -18,7 +18,7 @@ from papis_extract.annotation import Annotation
), ),
], ],
) )
def test_formatting_replacements(fmt_string: str, expected: str): def test_formatting_replacements(fmt_string, expected):
sut = Annotation( sut = Annotation(
"myfile", "myfile",
content="I am the text value", content="I am the text value",
@ -36,7 +36,7 @@ def test_formatting_replacements(fmt_string: str, expected: str):
("{{quote}} ({{doc.author}})", "I am the text value (document-author)"), ("{{quote}} ({{doc.author}})", "I am the text value (document-author)"),
], ],
) )
def test_formatting_document_access(fmt_string: str, expected: str): def test_formatting_document_access(fmt_string, expected):
sut = Annotation( sut = Annotation(
"myfile", "myfile",
content="I am the text value", content="I am the text value",
@ -64,7 +64,7 @@ def test_colorname_matches_exact():
(0.51, 0.0, 0.0), (0.51, 0.0, 0.0),
], ],
) )
def test_matches_inexact_colorname(color_value: tuple[float, float, float]): def test_matches_inexact_colorname(color_value):
sut = Annotation("testfile", color=color_value, minimum_similarity_color=0.833) sut = Annotation("testfile", color=color_value, minimum_similarity_color=0.833)
c_name = sut.colorname c_name = sut.colorname
assert c_name == "red" assert c_name == "red"

12
tests/test_formatting.py
View file

@ -48,22 +48,12 @@ def test_markdown_setext():
def test_count_default(): def test_count_default():
fmt = format_count fmt = format_count
assert fmt(document, annotations) == ("""2 document-author: document-title""") assert fmt(document, annotations) == ("""document-author - document-title: 2""")
def test_csv_default(): def test_csv_default():
fmt = format_csv fmt = format_csv
assert fmt(document, annotations) == ( assert fmt(document, annotations) == (
'Highlight,,0,"my lovely text","","document-author",'
'"document-title","","myfile.pdf"\n'
'Highlight,,0,"my second text","with note","document-author",'
'"document-title","","myfile.pdf"'
)
def test_csv_with_header():
fmt = format_csv
assert fmt(document, annotations, first=True) == (
"type,tag,page,quote,note,author,title,ref,file\n" "type,tag,page,quote,note,author,title,ref,file\n"
'Highlight,,0,"my lovely text","","document-author",' 'Highlight,,0,"my lovely text","","document-author",'
'"document-title","","myfile.pdf"\n' '"document-title","","myfile.pdf"\n'