diff --git a/scoping_review.qmd b/scoping_review.qmd index 71dbb3f..1ec5aa6 100644 --- a/scoping_review.qmd +++ b/scoping_review.qmd @@ -27,6 +27,17 @@ import seaborn as sns from tabulate import tabulate import bibtexparser +from contextlib import contextmanager +import logging +@contextmanager +def all_logging_disabled(highest_level=logging.CRITICAL): + previous_level = logging.root.manager.disable + logging.disable(highest_level) + try: + yield + finally: + logging.disable(previous_level) + sns.set_style("whitegrid") DATA_DIR=Path("./02-data") @@ -39,13 +50,15 @@ bib_string="" for partial_bib in RAW_DATA.glob("**/*.bib"): with open(partial_bib) as f: bib_string+="\n".join(f.readlines()) -bib_sample_raw_db = bibtexparser.parse_string(bib_string) +with all_logging_disabled(): + bib_sample_raw_db = bibtexparser.parse_string(bib_string) bib_string="" for partial_bib in WORKING_DATA.glob("**/*.bib"): with open(partial_bib) as f: bib_string+="\n".join(f.readlines()) -bib_sample = bibtexparser.parse_string(bib_string) +with all_logging_disabled(): + bib_sample = bibtexparser.parse_string(bib_string) # load relevant studies from src import load_data