From 1e4817196c6f64df61adec1a50333ed05aed33ee Mon Sep 17 00:00:00 2001
From: Marty Oehme <marty.oehme@gmail.com>
Date: Thu, 7 Dec 2023 11:15:44 +0100
Subject: [PATCH] chore(script): Rename data paths

---
 notes.qmd          | 4 ++++
 scoping_review.qmd | 9 +++++----
 2 files changed, 9 insertions(+), 4 deletions(-)

diff --git a/notes.qmd b/notes.qmd
index df9d49d..30af230 100644
--- a/notes.qmd
+++ b/notes.qmd
@@ -22,6 +22,10 @@ subtitle: Conceptual Definitions and Key Terms
 ```{python}
 #| echo: false
 from pathlib import Path
+DATA_DIR=Path("./02-data")
+RAW_DATA=DATA_DIR.joinpath("raw")
+WORKING_DATA=DATA_DIR.joinpath("intermediate")
+SUPPLEMENTARY_DATA=DATA_DIR.joinpath("supplementary")
 
 ## standard imports
 from IPython.core.display import Markdown as md
diff --git a/scoping_review.qmd b/scoping_review.qmd
index d0f8e51..5993c62 100644
--- a/scoping_review.qmd
+++ b/scoping_review.qmd
@@ -27,8 +27,9 @@ from pathlib import Path
 
 from bibtexparser.model import Field
 DATA_DIR=Path("./02-data")
-RAW_SAMPLE=DATA_DIR.joinpath("raw")
-WORKING_SAMPLE=DATA_DIR.joinpath("intermediate")
+RAW_DATA=DATA_DIR.joinpath("raw")
+WORKING_DATA=DATA_DIR.joinpath("intermediate")
+SUPPLEMENTARY_DATA=DATA_DIR.joinpath("supplementary")
 
 ## standard imports
 from IPython.core.display import Markdown as md
@@ -47,13 +48,13 @@ sns.set_style("whitegrid")
 import bibtexparser
 
 bib_string=""
-for partial_bib in RAW_SAMPLE.glob("**/*.bib"):
+for partial_bib in RAW_DATA.glob("**/*.bib"):
     with open(partial_bib) as f:
         bib_string+="\n".join(f.readlines())
 sample_raw = bibtexparser.parse_string(bib_string)
 
 bib_string=""
-for partial_bib in WORKING_SAMPLE.glob("**/*.bib"):
+for partial_bib in WORKING_DATA.glob("**/*.bib"):
     with open(partial_bib) as f:
         bib_string+="\n".join(f.readlines())
 sample = bibtexparser.parse_string(bib_string)