From 764b3204a1778b1595a1640b1d54496cbf2353f5 Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Thu, 11 Sep 2025 18:05:08 +0200 Subject: [PATCH 01/13] test: Add tests for readera extractor --- tests/extractors/test_readera.py | 24 +++++++ .../ReadEra_sample.txt | 0 tests/resources/Readest_sample.txt | 70 +++++++++++++++++++ 3 files changed, 94 insertions(+) create mode 100644 tests/extractors/test_readera.py rename tests/{extractors => resources}/ReadEra_sample.txt (100%) create mode 100644 tests/resources/Readest_sample.txt diff --git a/tests/extractors/test_readera.py b/tests/extractors/test_readera.py new file mode 100644 index 0000000..32bf023 --- /dev/null +++ b/tests/extractors/test_readera.py @@ -0,0 +1,24 @@ +from pathlib import Path + +from papis_extract.extractors.readera import ReadEraExtractor + +valid_file = Path("tests/resources/ReadEra_sample.txt") +invalid_file = Path("tests/resources/Readest_sample.txt") + + +def test_identifies_readera_exports(): + ex = ReadEraExtractor() + assert ex.can_process(valid_file) + + +# Readest exports are very similar so we should ensure it ignores them +def test_ignores_readest_exports(): + ex = ReadEraExtractor() + assert not ex.can_process(invalid_file) + + +def test_entry_extractions(): + ex = ReadEraExtractor() + result = ex.run(valid_file) + print(result) + assert False diff --git a/tests/extractors/ReadEra_sample.txt b/tests/resources/ReadEra_sample.txt similarity index 100% rename from tests/extractors/ReadEra_sample.txt rename to tests/resources/ReadEra_sample.txt diff --git a/tests/resources/Readest_sample.txt b/tests/resources/Readest_sample.txt new file mode 100644 index 0000000..6e0ab8f --- /dev/null +++ b/tests/resources/Readest_sample.txt @@ -0,0 +1,70 @@ +# Ideology and the Virtual City +**Author**: + +**Exported from Readest**: 2025-09-10 + +--- + +## Highlights & Annotations + +### 5 No More Heroes: The City as Wasteland +> "As an ideological response, this “escapist defeatism” contains elements of cynicism, in that it also involves an outward rejection of normal social demands and a pessimistic outlook. The difference between it and cynical self-interest, however, is that the defeatist doesn’t still want to thrive within the existing order. Whereas cynical self-interest distances behaviour from moral values only to really enjoy following dominant demands after all, the defeatist is less excited by regular notions of success, but cannot imagine a way out. I believe this position embodies various features of what Mark Fisher calls “capitalist realism,” which is less about competitive spirit or “making it” and more a kind of depressed state of low expectation within a totalizing capitalist reality." + +> "As an ideological response, this “escapist defeatism” contains elements of cynicism, in that it also involves an outward rejection of normal social demands and a pessimistic outlook. The difference between it and cynical self-interest, however, is that the defeatist doesn’t still want to thrive within the existing order. Whereas cynical self-interest distances behaviour from moral values only to really enjoy following dominant demands after all, the defeatist is less excited by regular notions of success, but cannot imagine a way out. I believe this position embodies various features of what Mark Fisher calls “capitalist realism,” which is less about competitive spirit or “making it” and more a kind of depressed state of low expectation within a totalizing capitalist reality." +**Note**:: Opposing cynical defeatism to cynical self-interest + +> "As he says, this modern depression “is constituted not by an inability to get pleasure so much as it is by an inability to do anything else except pursue pleasure. There is a sense that ‘something is missing’—but no appreciation that this mysterious, missing enjoyment can only be accessed beyond the pleasure principle.”22 And of course, the obsessive retreat into consumer pleasures only connects the defeatist even more deeply to the depressing reality, as it becomes part of the work-leisure cycle in which body and mind are allowed to relax, only to be rejuvenated for more draining labour. Even in strictly economic terms, if the escape is all we live for it still must be funded through labour; the only way to get more escape time is to return to the prison and earn it." +**Note**:: cf. Mark Fisher + +> "As he says, this modern depression “is constituted not by an inability to get pleasure so much as it is by an inability to do anything else except pursue pleasure. There is a sense that ‘something is missing’—but no appreciation that this mysterious, missing enjoyment can only be accessed beyond the pleasure principle.”22 And of course, the obsessive retreat into consumer pleasures only connects the defeatist even more deeply to the depressing reality, as it becomes part of the work-leisure cycle in which body and mind are allowed to relax, only to be rejuvenated for more draining labour. Even in strictly economic terms, if the escape is all we live for it still must be funded through labour; the only way to get more escape time is to return to the prison and earn it." + +> "His position then reflects the idea developed by Žižek through the terminology of psychoanalyst Jacques Lacan that, in placing increasing emphasis on personal responsibility for success and enjoyment, neoliberalized societies appear to have no “big Other,” or no generalized symbolic guarantee of meaning that explicitly prescribes standards of behaviour. With no singular authoritative voice to aid our decision-making, the attraction of consumerist distractions is perhaps unsurprising, but as the seductive promises of consumer entertainment remain unfulfilled, the pressure remains on us to take responsibility for this dissatisfaction as well. Neoliberalism’s constant demand to do more, without telling us what to do or where we might find it, means we are always guilty of failure, and can’t really identify once and for all what we wish to become" + +> "NMH highlights how consumerist escapist fantasies must be funded by the very normality we wish to escape, and the deeper the escape the more funding is required. The paradox is represented superbly in the kind of jobs Travis must do between matches. While there are extra contract killing jobs on offer, the game only grants access to these after the player completes more menial tasks taken from the local job centre, from picking coconuts and mowing lawns to collecting litter and cleaning graffiti. At these points, Travis is plunged back into an ideological normalcy where work is deemed valuable and fulfilling" + +> "NMH highlights how consumerist escapist fantasies must be funded by the very normality we wish to escape, and the deeper the escape the more funding is required. The paradox is represented superbly in the kind of jobs Travis must do between matches. While there are extra contract killing jobs on offer, the game only grants access to these after the player completes more menial tasks taken from the local job centre, from picking coconuts and mowing lawns to collecting litter and cleaning graffiti. At these points, Travis is plunged back into an ideological normalcy where work is deemed valuable and fulfilling" +**Note**:: 'No more heroes' + +> "“something deeper” may be seen in psychoanalytic terms as “death drive,” or a kind of gap in our subjective identities that means we are never quite fully reconciled with ourselves. It is an inevitable sense of uncertainty that emerges because there is no final truth about what things mean, only different understandings that emerge in human consciousness through language. No matter how knowledgeable we are, each of us only has our own perspective and cannot know the innermost feelings and thoughts of others. Moreover, our own deepest desires are not even compatible (for example, the desires for risk and security), so that satisfying one may leave us unsatisfied in another way. In short, nothing is ever really, conclusively fulfilling, and our ideological fantasies which make us feel that there is some absolute meaning merely distract us from that realization." + +--- + +### 6 Persona 5: The City as Prison +> "missing here is any appreciation of the extent to which neoliberalized political, financial, legal and cultural institutions themselves cause social disengagement, or how the logic of profit actively works against deeper democratic participation. In other words, it does not ask whether democracy may itself be problematic in its existing form, or whether people might be politically disengaged because of privatized media’s tendency to trivialize politics, the influence of corporate money on political parties, or the excessive demands on other aspects of their lives. Indeed, meaningful political change is unlikely, as Jodi Dean points out, when “the appeal to democracy presupposes democracy is the solution to the problems of democracy, because it incorporates in advance any hope things might be otherwise as already the fundamental democratic promise and provision.”25 " + +> "one is represented by the general public, who are shown to be uncommitted, fickle, apathetic and ignorant individuals that may want a just society, but take no responsibility for it. In what Žižek calls the “culture of complaint” in modern societies, they constantly ask some authority figure to make life better, and even “enjoy” playing the perpetual victim, effectively recognizing themselves as subordinates, rather than as agents who could actually affect change. Likewise, in P5, public opinion first imagines the Phantom Thieves as saviours, but later disowns them when they appear to have become too radical, and when Shido promises to restore order through conventional political means." + +--- + +### 7 Conclusion: Conformism and Critique +> "“hedonism,” in the context of neoliberalism I am thinking of a lifestyle that focuses substantially on consumerist entertainment or pleasure. This hedonist need not be an extreme thrill seeker or a wild party-goer. It would be equally “hedonistic,” in the sense I am defining here, for someone to fixate on what they might want for dinner every night, be genuinely excited about seeing the latest superhero movie, or constantly want to go shopping. In this way, for this hedonist, work is predominantly a means to an end that must be done to pay for enjoyment. The hedonist wouldn’t think twice about stopping work if they came into a large amount of money, but until then work is on balance a good thing, because it enables the purchase of pleasurable goods and services. At the same time, many big social issues, including politics, would appear boring to the hedonist. It is of course better when the economy is thriving, but it makes more sense to leave that stuff to the experts. In all this, such hedonism is not necessarily motivated by pure self-interest. Rather, it involves lines of rationalization based on neoliberal ideas, including consumerist concepts of identity creation but also an understanding of freedom in individual terms and a notion that there are no political alternatives." + +> "while it recognizes the hypocrisy when powerful figures claim to be acting in the best interests of all, it has no time for radical critique, whether left or right, that actually seeks significant changes to the status quo. Instead, the cynic wants things to stay as they are and to exploit them to his/her advantage. This self-interest is supported by pragmatic “realism.” The market is flawed, so the argument goes, but better than the alternative; at least we aren’t subjected to the oppressive and broken systems of, say, Soviet Russia or North Korea. We must remember that humans are a selfish and aggressive bunch, and grand social projects always fail, so we should make the most of what we have." +**Note**:: Cynical self-interest + +> "while it recognizes the hypocrisy when powerful figures claim to be acting in the best interests of all, it has no time for radical critique, whether left or right, that actually seeks significant changes to the status quo. Instead, the cynic wants things to stay as they are and to exploit them to his/her advantage. This self-interest is supported by pragmatic “realism.” The market is flawed, so the argument goes, but better than the alternative; at least we aren’t subjected to the oppressive and broken systems of, say, Soviet Russia or North Korea. We must remember that humans are a selfish and aggressive bunch, and grand social projects always fail, so we should make the most of what we have." + +> "it obscures that many people in the world still do have it bad, and that their situation is deeply connected to the wealth and freedoms elsewhere, so could improve under a different social order. Here, the cynic may claim that nothing can be done about this, or that someone somewhere always gets a raw deal, so we may as well just enjoy our luck. What is still missing, however, is any consideration that “human nature” has other aspects and adapts to different conditions, or that humans also share and act collectively, and are more likely to do so in more equal societies, where everyone has a stake and a reasonable quality of life." +**Note**:: Cynical self-interest + +> "it obscures that many people in the world still do have it bad, and that their situation is deeply connected to the wealth and freedoms elsewhere, so could improve under a different social order. Here, the cynic may claim that nothing can be done about this, or that someone somewhere always gets a raw deal, so we may as well just enjoy our luck. What is still missing, however, is any consideration that “human nature” has other aspects and adapts to different conditions, or that humans also share and act collectively, and are more likely to do so in more equal societies, where everyone has a stake and a reasonable quality of life." + +> "Central to cynicism is an idea that it rejects ideology for rationality, because ideologies are dogmatic and lead to authoritarianism. But with this alibi it fails to account for its own presumption of neoliberal ideas, particularly its onus on individual self-sufficiency and the impossibility of even potentially workable political or economic alternatives" + +> "In “escapist defeatism” there is also recognition of social problems and also a notion that not much can be done about them, at least by the average citizen. It does perhaps entail more of a historical dimension than cynical self-interest, in focusing less on human nature and more on the way things are now, under a seemingly omnipotent global capitalist system. Moreover, for the defeatist, taking advantage of the situation isn’t the most attractive option, because dominant notions of success simply don’t seem that satisfying, or because an outward pursuit of self-interest remains ethically abhorrent." + +> "Such media consumption goes beyond the throwaway pleasures of hedonism to a deeper identification with the chosen material, even if, deep down, the defeatist knows it is meaningless" + +> "how heavily tied they are to the economy, forcing the individuals concerned back into the normalcy of work-leisure routines to financially maintain their obsession. Another possible aspect of this lifestyle is a kind of victim complex, in which the powers that be are held responsible for life’s difficulties, but cannot be resisted, only mocked or angrily reproached. Either way, the defeatist does not take responsibility for his/her part in reproducing the status quo through excessive consumerist habits, or make any attempt to organize politically and create change." + +> "he answer is somewhere in between: the system works in principle but needs attention if it’s ever going to run smoothly enough to produce a proper meritocracy. What is required, therefore, is collective vigilance and effort to get involved in improving the system, to stop anyone from having an overly corruptive impact. In short, no major overhaul is required, merely greater commitment to properly enforce the concepts of justice and equal opportunity that already exist. This position involves strong political commitment and a good working knowledge of existing systems. But it also implies strict adherence to a particular set of principles, specifically ones that do not question the actual political, social and economic institutions that are currently in place. In addition, the very idea of “making it” inscribed into its meritocratic ideal is limited by neoliberal notions of success: fulfilling career potentials, accumulating property, developing personal relationships and expressing identities through consumerist" +**Note**:: Political reformism + +> "he answer is somewhere in between: the system works in principle but needs attention if it’s ever going to run smoothly enough to produce a proper meritocracy. What is required, therefore, is collective vigilance and effort to get involved in improving the system, to stop anyone from having an overly corruptive impact. In short, no major overhaul is required, merely greater commitment to properly enforce the concepts of justice and equal opportunity that already exist. This position involves strong political commitment and a good working knowledge of existing systems. But it also implies strict adherence to a particular set of principles, specifically ones that do not question the actual political, social and economic institutions that are currently in place. In addition, the very idea of “making it” inscribed into its meritocratic ideal is limited by neoliberal notions of success: fulfilling career potentials, accumulating property, developing personal relationships and expressing identities through consumerist" + +> "It does not consider whether these aims are really universal, or whether some people may have valid alternate desires that would require extensive social change to realize. Nor does it question whether meritocracy is fair in the first place, or whether people who simply lack marketable personal attributes deserve a lesser standard of life." + +> "Such a perspective may, for example, contemplate whether the kinds of work we are generally obliged to do are socially necessary or personally fulfilling. It may ask whether the demand to “enjoy responsibly” by balancing ever growing work and consumer pressures actually constitutes a meaningful or coherent life goal, or whether alternative goals could be more satisfactory. It can also imagine the possibility of greater political engagement from the majority of people, and what it means to take collective responsibility for social conditions, rather than following individual desires. And if all these ideas are framed in relation to neoliberal capitalist systems of economics, politics and culture, they can even consider whether the systems as such produce demands that are inherently unrealistic, antagonistic and socially destructive. + The specific questions that then arise from such critical thinking are many and varied. For example, are there even enough jobs, especially satisfying, well-paid jobs, for everyone to do today? Is throwaway mass consumerism environmentally sustainable? Does an individualized focus on employment and consumerism detract from more meaningful social activity? Are the demands of globalized markets compatible with free and effective political decision-making? To what extent does corporate advertising, PR and lobbying help frame our political desires? And how might we need to change society to provide the kind of meaning, involvement and satisfaction we desire? If some of these questions seem overly radical even for progressives who perceive a need to address existing social problems, it should be clear by now that getting to the root of these problems may require re-evaluation of even the most deeply embedded assumptions about how societies work and how they could work." + +--- From 04bc256a168ff962858736f607068fd43cb74540 Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Thu, 11 Sep 2025 18:38:59 +0200 Subject: [PATCH 02/13] fix: Fix annotation value comparison --- papis_extract/annotation.py | 8 ++++++-- tests/test_annotation.py | 6 ++++++ 2 files changed, 12 insertions(+), 2 deletions(-) diff --git a/papis_extract/annotation.py b/papis_extract/annotation.py index 97bd950..d3dadb9 100644 --- a/papis_extract/annotation.py +++ b/papis_extract/annotation.py @@ -1,5 +1,4 @@ import math -from dataclasses import dataclass from typing import Any, cast import chevron @@ -21,7 +20,6 @@ COLORS: dict[str, tuple[float, float, float]] = { } -@dataclass class Annotation: """A PDF annotation object. @@ -140,3 +138,9 @@ class Annotation: ) return cast("dict[str, str]", rawvalue) + + def __str__(self) -> str: + return f"Annotation({self.type}: '{self.file}', color: {self.color}, tag: '{self.tag}', page: {self.page}, content: '{self.content}', note: '{self.note}', minimum_similarity_color: {self.minimum_similarity_color})" + + def __repr__(self) -> str: + return f"Annotation(type={self.type}, file='{self.file}', color={self.color}, tag='{self.tag}', page={self.page}, content='{self.content}', note='{self.note}', minimum_similarity_color={self.minimum_similarity_color})" diff --git a/tests/test_annotation.py b/tests/test_annotation.py index ceb0c0e..6d177a5 100644 --- a/tests/test_annotation.py +++ b/tests/test_annotation.py @@ -4,6 +4,12 @@ from papis.document import Document from papis_extract.annotation import Annotation +def test_value_comparison_works(): + sut = Annotation("myfile", content="Here be content!", note="and a note") + other = Annotation("myfile", content="Here be different content!", note="but still a note") + assert sut != other + + @pytest.mark.parametrize( "fmt_string,expected", [ From 9c27ea1f6f3504fe5919e3e4d3baec40c7463004 Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Thu, 11 Sep 2025 20:16:05 +0200 Subject: [PATCH 03/13] chore: Implement Annotation sort and equality dunders --- papis_extract/annotation.py | 33 +++++++++++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/papis_extract/annotation.py b/papis_extract/annotation.py index d3dadb9..0df9d39 100644 --- a/papis_extract/annotation.py +++ b/papis_extract/annotation.py @@ -1,4 +1,5 @@ import math +from types import NotImplementedType from typing import Any, cast import chevron @@ -144,3 +145,35 @@ class Annotation: def __repr__(self) -> str: return f"Annotation(type={self.type}, file='{self.file}', color={self.color}, tag='{self.tag}', page={self.page}, content='{self.content}', note='{self.note}', minimum_similarity_color={self.minimum_similarity_color})" + + def __eq__(self, other: object) -> bool | NotImplementedType: + if not isinstance(other, Annotation): + return NotImplemented + + return ( + self.content.lower(), + self.note.lower(), + self.type, + self.file, + self.color, + self.tag, + self.page, + ) == ( + other.content.lower(), + other.note.lower(), + other.type, + other.file, + other.color, + other.tag, + other.page, + ) + + def __lt__(self, other: object) -> bool: + if not hasattr(other, "page"): + return NotImplemented + + other = cast("Annotation", other) + selfpage = self.page if self.page != 0 else float("inf") + otherpage = other.page if other.page != 0 else float("inf") + + return selfpage < otherpage From 729b6aa62a576dfa150a4cbec537d62182b186b0 Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Thu, 11 Sep 2025 18:38:59 +0200 Subject: [PATCH 04/13] fix: Do not parse the last ReadEra section --- papis_extract/extractors/readera.py | 13 +++++++------ tests/extractors/test_readera.py | 20 ++++++++++++++++++-- tests/resources/ReadEra_sample.txt | 18 +++++------------- 3 files changed, 30 insertions(+), 21 deletions(-) diff --git a/papis_extract/extractors/readera.py b/papis_extract/extractors/readera.py index a968255..b6159ff 100644 --- a/papis_extract/extractors/readera.py +++ b/papis_extract/extractors/readera.py @@ -44,11 +44,10 @@ class ReadEraExtractor: def run(self, filename: Path) -> list[Annotation]: """Extract annotations from readera txt file. - Returns all readable annotations contained in the file - passed in, with highlights and notes if available. - Could theoretically return the annotation color but I - do not have access to a premium version of ReadEra so - I cannot add this feature. + Returns all readable annotations contained in the file passed in, with + highlights and notes if available. Could theoretically return the + annotation color but I do not have access to a premium version of + ReadEra so I cannot add this feature. """ content = self._read_file(filename)[2:] if not content: @@ -56,7 +55,9 @@ class ReadEraExtractor: annotations: list[Annotation] = [] - split = "\n".join(content).split("\n*****\n") + # split for *** separators and remove the last entry since it is always + # empty + split = "\n".join(content).split("\n*****\n")[:-1] note_pattern = re.compile(r"\n--.*") for entry in split: entry = entry.strip() diff --git a/tests/extractors/test_readera.py b/tests/extractors/test_readera.py index 32bf023..1061666 100644 --- a/tests/extractors/test_readera.py +++ b/tests/extractors/test_readera.py @@ -1,10 +1,27 @@ from pathlib import Path +from papis_extract.annotation import Annotation from papis_extract.extractors.readera import ReadEraExtractor valid_file = Path("tests/resources/ReadEra_sample.txt") invalid_file = Path("tests/resources/Readest_sample.txt") +expected = [ + Annotation( + file="tests/resources/ReadEra_sample.txt", + content="digital technologies of the twenty-first century can only exist thanks to this kind of outsourced labor. The relative invisibility of the tech supply chain is part of the ruse; American consumers do not see where smartphones come from.", + ), + Annotation( + file="tests/resources/ReadEra_sample.txt", + content="We don’t necessarily want our leaders to be average persons like us, even though we often enjoy hearing that famous celebrities eat the same fast food as regular people. ", + note="We continuously demystify our leaders - first through television, now through social media", + ), + Annotation( + file="tests/resources/ReadEra_sample.txt", + content="Initially, the Internet was praised as a freer way to encounter information. In the early 1990s, digital theorist George Landow saw hypertext as a liberatory reading strategy.", + ), +] + def test_identifies_readera_exports(): ex = ReadEraExtractor() @@ -20,5 +37,4 @@ def test_ignores_readest_exports(): def test_entry_extractions(): ex = ReadEraExtractor() result = ex.run(valid_file) - print(result) - assert False + assert result == expected diff --git a/tests/resources/ReadEra_sample.txt b/tests/resources/ReadEra_sample.txt index de84412..c73029f 100644 --- a/tests/resources/ReadEra_sample.txt +++ b/tests/resources/ReadEra_sample.txt @@ -1,25 +1,17 @@ The Circle of the Snake Grafton Tanner -digital technologies of the twenty-first century can only exist thanks to this kind of outsourced labor. The relative invisibility of the tech supply chain is part of the ruse; American consumers do not see where smartphones come from. They do not see the conflict zones where coltan is mined to be used in electronic devices, or the sweatshops in which digital products are manufactured. The latest technologies arrive instead in pristine condition, as if delivered from on high. +digital technologies of the twenty-first century can only exist thanks to this kind of outsourced labor. The relative invisibility of the tech supply chain is part of the ruse; American consumers do not see where smartphones come from. ***** -We don’t necessarily want our leaders to be average persons like us, even though we often enjoy hearing that famous celebrities eat the same fast food as regular people. But in the beginning of the twenty-first century, we carefully watch our public figures to ensure they do not commit an unconscionable act. Doing so helps to rid the public stage of bigots, even as it also threatens the last known walls of privacy. This is an inevitable tension that must be maintained as we open the door on the private lives of others ---We continuously demystify our leaders - first through television, now through social media, streams, docus, etc. this brings them down to our level, which is what this paragraph talks about +We don’t necessarily want our leaders to be average persons like us, even though we often enjoy hearing that famous celebrities eat the same fast food as regular people. +--We continuously demystify our leaders - first through television, now through social media ***** -Initially, the Internet was praised as a freer way to encounter information. In the early 1990s, digital theorist George Landow saw hypertext as a liberatory reading strategy.¹⁶ He embraced it as a common good and thought hyperlinks would emancipate readers from the prison of the fixed word, allowing them to flow freely between various information sources. But what Landow never imagined is the exhaustion that could come from the endless, rootless process of reading in this way. Not everyone wants to jump from point to point without any center. Infinity might not always be alluring. -Landow puts the agency in the reader when he writes, ‘anyone who uses hypertext makes his or her own interests the de facto organizing principle (or center) for the investigation at the moment.’¹⁷ But how much agency do we actually have when falling down the rabbit hole? What if we get lost in the hole where the center was? How much attention do we end up losing in a world where we must always multi-task and where reading itself is disrupted by one hyperlink after another? And who - -***** - -In the Dust of This Planet -Horror of Philosophy vol. 1 -Eugene Thacker -In the first of a series of three books on the Horror of Philosophy,In the Dust of This Planetoffers the genre of horror as a way of thinking about the unthinkable. -Paperback: 978-1-84694-676-9 ebook: 978-1-78099-010-1 +Initially, the Internet was praised as a freer way to encounter information. +In the early 1990s, digital theorist George Landow saw hypertext as a liberatory reading strategy. ***** From b2ce6023a2c361c373df67a8aebe3f96b7a2bd3a Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Thu, 11 Sep 2025 21:37:18 +0200 Subject: [PATCH 05/13] chore: Log found files for extractors to debug logger --- papis_extract/extractors/pdf.py | 7 ++++++- papis_extract/extractors/pocketbook.py | 12 +++++++----- papis_extract/extractors/readera.py | 2 +- 3 files changed, 14 insertions(+), 7 deletions(-) diff --git a/papis_extract/extractors/pdf.py b/papis_extract/extractors/pdf.py index 5df854e..3ba9873 100644 --- a/papis_extract/extractors/pdf.py +++ b/papis_extract/extractors/pdf.py @@ -25,7 +25,12 @@ class PdfExtractor: if not filename.is_file(): logger.error(f"File {str(filename)} not readable.") return False - return self._is_pdf(filename) + + if not self._is_pdf(filename): + return False + + logger.debug(f"Found processable annotation file: {filename}") + return True def run(self, filename: Path) -> list[Annotation]: """Extract annotations from a file. diff --git a/papis_extract/extractors/pocketbook.py b/papis_extract/extractors/pocketbook.py index 46ba66b..5fc0585 100644 --- a/papis_extract/extractors/pocketbook.py +++ b/papis_extract/extractors/pocketbook.py @@ -20,11 +20,13 @@ class PocketBookExtractor: return False html = BeautifulSoup(content, features="xml") - return bool( - html.find( - "meta", {"name": "generator", "content": "PocketBook Bookmarks Export"} - ) - ) + if not html.find( + "meta", {"name": "generator", "content": "PocketBook Bookmarks Export"} + ): + return False + + logger.debug(f"Found processable annotation file: {filename}") + return True def run(self, filename: Path) -> list[Annotation]: """Extract annotations from pocketbook html file. diff --git a/papis_extract/extractors/readera.py b/papis_extract/extractors/readera.py index b6159ff..d992512 100644 --- a/papis_extract/extractors/readera.py +++ b/papis_extract/extractors/readera.py @@ -37,7 +37,7 @@ class ReadEraExtractor: return False logger.debug( - f"Found annotation file processable with ReadEraExtractor: {filename}" + f"Found processable annotation file: {filename}" ) return True From d312f75655fc7feed85fd5aae07ec04d237d5d70 Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Thu, 11 Sep 2025 21:37:18 +0200 Subject: [PATCH 06/13] feat: Add Readest extractor --- papis_extract/extractors/__init__.py | 3 +- papis_extract/extractors/readest.py | 78 ++++++++++++++++++++++++++++ 2 files changed, 80 insertions(+), 1 deletion(-) create mode 100644 papis_extract/extractors/readest.py diff --git a/papis_extract/extractors/__init__.py b/papis_extract/extractors/__init__.py index b943913..a49d010 100644 --- a/papis_extract/extractors/__init__.py +++ b/papis_extract/extractors/__init__.py @@ -3,7 +3,7 @@ from importlib.util import find_spec import papis.logging from papis_extract.extraction import Extractor -from papis_extract.extractors import pdf, readera +from papis_extract.extractors import pdf, readera, readest from papis_extract.extractors.pocketbook import PocketBookExtractor logger = papis.logging.get_logger(__name__) @@ -12,6 +12,7 @@ all_extractors: dict[str, Extractor] = {} all_extractors["pdf"] = pdf.PdfExtractor() all_extractors["readera"] = readera.ReadEraExtractor() +all_extractors["readest"] = readest.ReadestExtractor() if find_spec("bs4") and find_spec("magic"): all_extractors["pocketbook"] = PocketBookExtractor() diff --git a/papis_extract/extractors/readest.py b/papis_extract/extractors/readest.py new file mode 100644 index 0000000..1d0df08 --- /dev/null +++ b/papis_extract/extractors/readest.py @@ -0,0 +1,78 @@ +# pyright: strict, reportUnknownMemberType=false +import re +from pathlib import Path + +import magic +import papis.logging + +from papis_extract.annotation import Annotation + +logger = papis.logging.get_logger(__name__) + + +class ReadestExtractor: + """Extracts exported annotations from the FOSS Readest book reading app. + + https://readest.com/ + """ + + def can_process(self, filename: Path) -> bool: + if magic.from_file(filename, mime=True) != "text/plain": + return False + + content = self._read_file(filename) + if not content: + return False + + # look for star-shaped divider pattern + if not re.search( + r"\n\*\*Exported from Readest\*\*: \d{4}-\d{2}-\d{2}\n", "".join(content) + ): + return False + + logger.debug(f"Found processable annotation file: {filename}") + return True + + def run(self, filename: Path) -> list[Annotation]: + """Extract annotations from readest txt file. + + Returns all readable annotations contained in the file passed in, with + highlights and notes if available. + """ + content = self._read_file(filename)[2:] + if not content: + return [] + + annotations: list[Annotation] = [] + + for i, line in enumerate(content): + entry_content: str = "" + entry_note: str = "" + if line.startswith("> "): + entry_content = line.lstrip('> "').rstrip('\n" ') + nextline = content[i + 1] + if nextline.startswith("**Note**:: "): + entry_note = nextline.removeprefix("**Note**:: ").strip() + + a = Annotation( + file=str(filename), + content=entry_content, + note=entry_note, + # NOTE: Unfortunately Readest currently does not export color information + # color=color, + ) + annotations.append(a) + + logger.debug( + f"Found {len(annotations)} " + f"{'annotation' if len(annotations) == 1 else 'annotations'} for {filename}." + ) + return annotations + + def _read_file(self, filename: Path) -> list[str]: + try: + with filename.open("r") as fr: + return fr.readlines() + except FileNotFoundError: + logger.error(f"Could not open file {filename} for extraction.") + return [] From 30bc8452fac8ac1aafc5bf6079844f8479cb934a Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Thu, 11 Sep 2025 23:28:47 +0200 Subject: [PATCH 07/13] chore: Remove unnecessary imports --- papis_extract/exporter.py | 5 ----- papis_extract/extraction.py | 2 -- 2 files changed, 7 deletions(-) diff --git a/papis_extract/exporter.py b/papis_extract/exporter.py index 13fe082..5cb0221 100644 --- a/papis_extract/exporter.py +++ b/papis_extract/exporter.py @@ -1,13 +1,8 @@ from dataclasses import dataclass from typing import Protocol -import papis.api -import papis.commands.edit -import papis.config import papis.document -import papis.git import papis.logging -import papis.notes from papis_extract.annotation import Annotation from papis_extract.formatter import Formatter diff --git a/papis_extract/extraction.py b/papis_extract/extraction.py index 19c4ccc..139aabf 100644 --- a/papis_extract/extraction.py +++ b/papis_extract/extraction.py @@ -1,8 +1,6 @@ from pathlib import Path from typing import Protocol -import papis.config -import papis.document import papis.logging from papis.document import Document From 7459fbeb0b63cfe194a4d451cab379dbdda6f163 Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Fri, 12 Sep 2025 09:47:41 +0200 Subject: [PATCH 08/13] chore: Remove python-magic dependency It relies on the libmagic module which is not necessarily installed everywhere. Most of the functionality that we need for our purposes can be recreated with lighter-weight methods. --- papis_extract/extractors/pdf.py | 4 ++-- papis_extract/extractors/pocketbook.py | 7 +++++-- papis_extract/extractors/readera.py | 11 ++++++----- papis_extract/extractors/readest.py | 22 ++++++++++++++++++++-- pyproject.toml | 1 - 5 files changed, 33 insertions(+), 12 deletions(-) diff --git a/papis_extract/extractors/pdf.py b/papis_extract/extractors/pdf.py index 3ba9873..d161229 100644 --- a/papis_extract/extractors/pdf.py +++ b/papis_extract/extractors/pdf.py @@ -1,10 +1,10 @@ # pyright: strict, reportMissingTypeStubs=false, reportUnknownMemberType=false +import mimetypes from collections.abc import Generator from pathlib import Path from typing import NamedTuple, cast import Levenshtein -import magic import papis.config import papis.logging import pymupdf as mu @@ -77,7 +77,7 @@ class PdfExtractor: def _is_pdf(self, fname: Path) -> bool: """Check if file is a pdf, using mime type.""" - return magic.from_file(fname, mime=True) == "application/pdf" + return mimetypes.guess_type(fname)[0] == "application/pdf" def _get_annotation_content( self, page: mu.Page, annotation: mu.Annot diff --git a/papis_extract/extractors/pocketbook.py b/papis_extract/extractors/pocketbook.py index 5fc0585..928aad1 100644 --- a/papis_extract/extractors/pocketbook.py +++ b/papis_extract/extractors/pocketbook.py @@ -1,7 +1,7 @@ # pyright: strict, reportUnknownMemberType=false +import mimetypes from pathlib import Path -import magic import papis.logging from bs4 import BeautifulSoup @@ -12,7 +12,7 @@ logger = papis.logging.get_logger(__name__) class PocketBookExtractor: def can_process(self, filename: Path) -> bool: - if magic.from_file(filename, mime=True) != "text/xml": + if not self._is_html(filename): return False content = self._read_file(filename) @@ -28,6 +28,9 @@ class PocketBookExtractor: logger.debug(f"Found processable annotation file: {filename}") return True + def _is_html(self, filename: Path) -> bool: + return mimetypes.guess_type(filename)[0] == "text/html" + def run(self, filename: Path) -> list[Annotation]: """Extract annotations from pocketbook html file. diff --git a/papis_extract/extractors/readera.py b/papis_extract/extractors/readera.py index d992512..c8905fe 100644 --- a/papis_extract/extractors/readera.py +++ b/papis_extract/extractors/readera.py @@ -1,8 +1,8 @@ # pyright: strict, reportUnknownMemberType=false +import mimetypes import re from pathlib import Path -import magic import papis.logging from papis_extract.annotation import Annotation @@ -17,7 +17,7 @@ class ReadEraExtractor: """ def can_process(self, filename: Path) -> bool: - if magic.from_file(filename, mime=True) != "text/plain": + if not self._is_txt(filename): return False content = self._read_file(filename) @@ -36,11 +36,12 @@ class ReadEraExtractor: if not re.search(r"\n\*\*\*\*\*\n\n$", "".join(content)): return False - logger.debug( - f"Found processable annotation file: {filename}" - ) + logger.debug(f"Found processable annotation file: {filename}") return True + def _is_txt(self, filename: Path) -> bool: + return mimetypes.guess_type(filename)[0] == "text/plain" + def run(self, filename: Path) -> list[Annotation]: """Extract annotations from readera txt file. diff --git a/papis_extract/extractors/readest.py b/papis_extract/extractors/readest.py index 1d0df08..f387721 100644 --- a/papis_extract/extractors/readest.py +++ b/papis_extract/extractors/readest.py @@ -2,13 +2,15 @@ import re from pathlib import Path -import magic import papis.logging from papis_extract.annotation import Annotation logger = papis.logging.get_logger(__name__) +ACCEPTED_EXTENSIONS = [".txt", ".md", ".qmd", ".rmd"] +TEXTCHARS = bytearray({7, 8, 9, 10, 12, 13, 27} | set(range(0x20, 0x100)) - {0x7F}) + class ReadestExtractor: """Extracts exported annotations from the FOSS Readest book reading app. @@ -17,7 +19,7 @@ class ReadestExtractor: """ def can_process(self, filename: Path) -> bool: - if magic.from_file(filename, mime=True) != "text/plain": + if not self._is_readable_text(filename): return False content = self._read_file(filename) @@ -33,6 +35,22 @@ class ReadestExtractor: logger.debug(f"Found processable annotation file: {filename}") return True + def _is_readable_text(self, filename: Path) -> bool: + """Checks whether a file has a valid text extension and is not a binary file. + + A file is considered a valid text file if its extension is in + :data:`ACCEPTED_EXTENSIONS` and does not contain any non-text characters. + + :returns: A boolean indicating whether the file is a valid text file. + """ + if filename.suffix not in ACCEPTED_EXTENSIONS: + return False + try: + with filename.open("rb") as rb: + return not bool(rb.read(1024).translate(None, TEXTCHARS)) + except (FileNotFoundError, PermissionError): + return False + def run(self, filename: Path) -> list[Annotation]: """Extract annotations from readest txt file. diff --git a/pyproject.toml b/pyproject.toml index f9fc3c1..bf39ddf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,7 +22,6 @@ keywords = [ "bibliography", "reference manager", "research", - "science", ] [project.urls] From dfc3bdea70bbba35a7161dcee4d9654e5141076b Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Fri, 12 Sep 2025 10:19:49 +0200 Subject: [PATCH 09/13] chore: Formatting for ruff check --- tests/test_annotation.py | 4 +++- tests/test_formatting.py | 2 +- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/tests/test_annotation.py b/tests/test_annotation.py index 6d177a5..7f5abe3 100644 --- a/tests/test_annotation.py +++ b/tests/test_annotation.py @@ -6,7 +6,9 @@ from papis_extract.annotation import Annotation def test_value_comparison_works(): sut = Annotation("myfile", content="Here be content!", note="and a note") - other = Annotation("myfile", content="Here be different content!", note="but still a note") + other = Annotation( + "myfile", content="Here be different content!", note="but still a note" + ) assert sut != other diff --git a/tests/test_formatting.py b/tests/test_formatting.py index 27eb702..7c4b381 100644 --- a/tests/test_formatting.py +++ b/tests/test_formatting.py @@ -1,6 +1,6 @@ from papis.document import Document -from papis_extract.annotation import Annotation +from papis_extract.annotation import Annotation from papis_extract.formatter import ( format_count, format_csv, From 4b6079d4a3933d19810999e23a32a41d19355ffb Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Fri, 12 Sep 2025 10:19:49 +0200 Subject: [PATCH 10/13] ci: Update woodpecker ci to use uv images --- .woodpecker/lint.yml | 18 +++++++++--------- .woodpecker/static_analysis.yml | 8 ++++---- .woodpecker/test.yml | 6 +++--- 3 files changed, 16 insertions(+), 16 deletions(-) diff --git a/.woodpecker/lint.yml b/.woodpecker/lint.yml index 4400de4..3601016 100644 --- a/.woodpecker/lint.yml +++ b/.woodpecker/lint.yml @@ -1,16 +1,16 @@ steps: lint_ruff: - image: python + image: ghcr.io/astral-sh/uv:python3.11-trixie-slim commands: - - pip install ruff - - python --version && poetry --version && ruff --version + - uv tool install ruff + - python --version && uv --version && ruff --version - echo "----------------- running ruff lint ------------------" - ruff check . - lint_black: - image: python + format_ruff: + image: ghcr.io/astral-sh/uv:python3.11-trixie-slim commands: - - pip install black - - python --version && poetry --version && black --version - - echo "----------------- running black lint ----------------" - - black --check . + - uv tool install ruff + - python --version && uv --version && ruff --version + - echo "----------------- running ruff format ------------------" + - ruff format --check . diff --git a/.woodpecker/static_analysis.yml b/.woodpecker/static_analysis.yml index 5244d3a..037007b 100644 --- a/.woodpecker/static_analysis.yml +++ b/.woodpecker/static_analysis.yml @@ -1,9 +1,9 @@ steps: pyright: - image: nikolaik/python-nodejs + image: ghcr.io/astral-sh/uv:python3.11-trixie-slim commands: - - npm install --global pyright - - uv sync - - python --version && uv version && pyright --version + - uv tool install pyright + - uv sync --locked + - python --version && uv --version && pyright --version - echo "------------- running pyright typecheck -------------" - uv run pyright diff --git a/.woodpecker/test.yml b/.woodpecker/test.yml index 5ae9b1d..b8d5947 100644 --- a/.woodpecker/test.yml +++ b/.woodpecker/test.yml @@ -3,9 +3,9 @@ when: steps: pytest: - image: nikolaik/python-nodejs + image: ghcr.io/astral-sh/uv:python3.11-trixie-slim commands: - - uv sync - - python --version && uv version + - uv sync --locked + - python --version && uv --version - echo "------------- running pytest -------------" - uv run pytest From 7856769cda1b07e9b8fc6762d23909232554b228 Mon Sep 17 00:00:00 2001 From: Marty Oehme Date: Fri, 12 Sep 2025 10:44:53 +0200 Subject: [PATCH 11/13] chore: Update beautifulsoup4 dependency Updated dependency and, with its newly provided type hints, removed some pyright overrides. Added a cast where there was still not enough type hinting. --- papis_extract/extractors/pocketbook.py | 11 +++++------ uv.lock | 16 +++++++++++++--- 2 files changed, 18 insertions(+), 9 deletions(-) diff --git a/papis_extract/extractors/pocketbook.py b/papis_extract/extractors/pocketbook.py index 928aad1..812175d 100644 --- a/papis_extract/extractors/pocketbook.py +++ b/papis_extract/extractors/pocketbook.py @@ -1,6 +1,7 @@ # pyright: strict, reportUnknownMemberType=false import mimetypes from pathlib import Path +from typing import cast import papis.logging from bs4 import BeautifulSoup @@ -48,16 +49,14 @@ class PocketBookExtractor: annotations: list[Annotation] = [] for bm in html.select("div.bookmark"): content = str( - (bm.select_one("div.bm-text>p") or html.new_string("")).text or "" # pyright: ignore [reportUnknownArgumentType] + (bm.select_one("div.bm-text>p") or html.new_string("")).text or "" ) note = str( - (bm.select_one("div.bm-note>p") or html.new_string("")).text or "" # pyright: ignore [reportUnknownArgumentType] - ) - page = int( - (bm.select_one("p.bm-page") or html.new_string("")).text or 0 # pyright: ignore [reportUnknownArgumentType] + (bm.select_one("div.bm-note>p") or html.new_string("")).text or "" ) + page = int((bm.select_one("p.bm-page") or html.new_string("")).text or 0) - el_classes = bm.attrs.get("class", "").split(" ") + el_classes = cast("str", bm.attrs.get("class", "")).split(" ") color = (0, 0, 0) for c in el_classes: if "bm-color-" in c: diff --git a/uv.lock b/uv.lock index a1744be..63dcf25 100644 --- a/uv.lock +++ b/uv.lock @@ -17,14 +17,15 @@ wheels = [ [[package]] name = "beautifulsoup4" -version = "4.12.3" +version = "4.13.5" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "soupsieve" }, + { name = "typing-extensions" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/b3/ca/824b1195773ce6166d388573fc106ce56d4a805bd7427b624e063596ec58/beautifulsoup4-4.12.3.tar.gz", hash = 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